Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2643g00022 ATGGTGGACGAAAGTTCTGACAGCGACACCCGGAAAATTCGGAACATATGCATACTTGCACACGTGGACCACGGCAAGACGACGCTGGCGGACCACCTGATCGCGGCGGGGGGTGGCGGTTTTGTCCACCCGAAGCTTGCGGGTCGGGTTAGGTTCATGGACTACTTAGACGAAGAACAACGAAGGGCCATCACGATGAAGAGTTCTTCGATTTCCCTTTCCTATAAGGACTACTCTATCAACCTTATTGACTCACCAGGCCACATGGACTTCTGCAGTGAGGTCTCCACCGCCGCCCGCCTCAGCGACGGCGCCCTCGTCCTCGTCGACGCCGTCGAAGGCGTCCACATCCAGACCCACGCCGTGCTCCGTCAATGCTGGATCGAGCGTCTCTCACCTTGCTTGGTCCTCAACAAGATCGACCGTTTGATCACCGAATTGAAATTGAGCCCCTCCGAAGCCTATACTCGCTTGTTGAGGATCGTCCATGAGGTTAACGGCATTGTTAGCGCGTACAAGTCGGAGAAATACTTGTCCGACGTGGATTCTCTCCTCGCTGGTGCTGCCGCCGGCACCGGCGAGGTTCCGGAGGATTATTATGATGATGATAATGAGGATGTGTTTCAGCCTCAGAGAGGGAATGTGGTTTTTGCTTGTGCATTGGATGGTTGGGGTTTTGGGATTCATGAGTTTGCTGAAATATATGCTTCTAAGATTGGTGCGAGTGTTAATTCCTTGCAGAAAGCTTTGTGGGGTTCTAGGTATTTCAATCCCAAGACCAAGATGATTGTTGGGAAGAAAGAGAATGGAGCTGGTGGTGGTGGTGGTAAGAAGCCTATGTTTGTTCAGTTTGTGTTAGAGCCGCTTTGGCAGGTTTATAAGGGAGCTCTAGAAGGGGATAAAGTGTTGCTTGACAAAGTTATTAGGTCCTTTAGTTTGTCAATTCCGGCGCGAGAATTGCAAGATAAGGATGCTAAACGAGTGCTTCAGGCAGTTATGAGCCGTTGGCTTCCTCTTTCGGATACTATCTTGTCCATGGTGGTTAAGTGTATGCCGGATCCTGTTGTGGCACAGTCGTATCGCATCTCGCGGCTGCTTCCTAAGTGTGAGGTTGTTGTTGAGGATGGGGTTGATAGGAGAGTGGCGGAAGAGGCTGAGTTTGTGAGGAAATCGGTGGAGGGGTGTGATGGGAGGAATGAAGCTCCTTGTGTTGCTTTTGTGTCAAAAATGTTTGCTGTCCCAGTTAAAATGCTTCCTCATCCTATCAGCGATGAAGGAGAGGGTGAGTCGGATGAATGTTTTTTGGCATTTGCTAGGATCTTTAGTGGGGTTTTGTCTGTGGGGCAGAGAGTTTTTGTGCTTTCTGCGTTGTATGATCCGCTGAAAGGCGGGGAATCAATGCAAAAACATGTTCAGGAAGCTGAATTACAATCCATGTATCTAATGATGGGTCAAGGATTGAAAGTAGTGGCATCTGCCAAAGCAGGAAATGTTGTTGCTATCCGAGGCCTTGGCCAGCATATATTGAAAAGTGCTACTCTTTCTTCTACTAGGAACTGTTGGCCTTTTTCAAGTATGGCATTCCAAGTTGCCCCAACTTTGAGGGTTGCAATTGAGCCATCTGACCCTGCAGATGTGGGTGCACTACTGAAGGGTTTGAGGCTTCTGAATCGCGCCGATCCCTTTGTTGAGGTCACGGTTTCTGCAAGAGGAGAGCATGTACTTGCTGCAGCAGGCGAAGTTCATCTTGAAAGATGCATAAAGGATTTAAAGGAGAGGTTTGCAAAAGTAAGCTTGGAAGTCTCTCCGCCTCTTGTGTCCTACAAAGAGACCATTGAGGGAGAGGTGTCTAACATCCTGGAAAATTTGAAAGTTCTTAGTAGGAGCTCAGATTATGTTGAAAAATCAACACCCAATGGAAGATGTGTTGTCCGTGTGCAGGTGATAAAACTTCTACCTTCTATTACAAAGGTGCTCGATGAAAGCTCTGATTTACTTGGAGATATCATCGGAGTAAAATCGGGGCAGACTGTTAAAAGTTTGGAGACCCAAAGTCCAAATATTCTTAAAAATGATAATCCAGCTGAAGTGCTGAAGAAACGCATAATGGATGCAGTGGAGAGTGATATTTTGAGCAATGAGAATGACAAGGACCATGCTGAAAACTGCAAACTCAAGTGGCTAAAGCTTTTGAGGAGTATATGGGCACTTGGACCAAGGCAAATTGGTCCTAACGTTCTTTGTACTCCTGATATTAAAGCAGAAAGTACTGATAGCTCTGTTCTAATACGTGGTTGTTCTAATGTATCTGAAAGGTTGGGCTTTGTGACTGATTCTAATAACAGTAACTCAGTTGCTGAGACATCTTCAAACGCTAGCCAAGAGTTGTACATGGATGCTGAGCATCTTGAGAGTAGTGTTATATCGGGTTTCCAACTGGCCACTTCGGCTGGACCCTTGTGTGATGAACCTATGTGGGGTTTAGCGTTTGTTGTTGAGGCACATATATCTCCAATTACAGGGTCCTATGATGAATCTGAAACACACCAACACTCTGAGCAATATGGCATCATTGCAGGGCAGGTAATTGCAACTGTCAAAGATGCTTGTAGAGCAGCTGTGCTTCAGAATAAGCCACGACTTGTGGAAGCAATGTACTTTTGTGAATTGAATACCCCTACTGAATATTTGGGTCCGATGTATGCTGTACTTGCCCGAAGACGGGCCCGAGTTTTGAAGGAAGAGATGCAGGAAGGTTCCCCTTTCTTCACTGTGCATGCATATGTTCCTGTTTCTGAGAGCTTTGGTTTTGCAGATGAGCTTAGAAGGTGGACTTCTGGTGCTGCAAATGCACTACTTGTCCTTAGCCACTGGGAAGCACTTCCTGAGGATCCTTTCTTTGTACCTAAAACAGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTTCTTCCAAATACAGCAAGAAAGTTAATTGATGCAGTCAGACGGCGTAAGGGCCTTCCTGTGGAGGAAAAGGTAGTACAGCATGGAACCAAGCAGAGGACACGGGCTCGTAAAGTGTGA 3069 0.4676 MVDESSDSDTRKIRNICILAHVDHGKTTLADHLIAAGGGGFVHPKLAGRVRFMDYLDEEQRRAITMKSSSISLSYKDYSINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKIDRLITELKLSPSEAYTRLLRIVHEVNGIVSAYKSEKYLSDVDSLLAGAAAGTGEVPEDYYDDDNEDVFQPQRGNVVFACALDGWGFGIHEFAEIYASKIGASVNSLQKALWGSRYFNPKTKMIVGKKENGAGGGGGKKPMFVQFVLEPLWQVYKGALEGDKVLLDKVIRSFSLSIPARELQDKDAKRVLQAVMSRWLPLSDTILSMVVKCMPDPVVAQSYRISRLLPKCEVVVEDGVDRRVAEEAEFVRKSVEGCDGRNEAPCVAFVSKMFAVPVKMLPHPISDEGEGESDECFLAFARIFSGVLSVGQRVFVLSALYDPLKGGESMQKHVQEAELQSMYLMMGQGLKVVASAKAGNVVAIRGLGQHILKSATLSSTRNCWPFSSMAFQVAPTLRVAIEPSDPADVGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGEVSNILENLKVLSRSSDYVEKSTPNGRCVVRVQVIKLLPSITKVLDESSDLLGDIIGVKSGQTVKSLETQSPNILKNDNPAEVLKKRIMDAVESDILSNENDKDHAENCKLKWLKLLRSIWALGPRQIGPNVLCTPDIKAESTDSSVLIRGCSNVSERLGFVTDSNNSNSVAETSSNASQELYMDAEHLESSVISGFQLATSAGPLCDEPMWGLAFVVEAHISPITGSYDESETHQHSEQYGIIAGQVIATVKDACRAAVLQNKPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPFFTVHAYVPVSESFGFADELRRWTSGAANALLVLSHWEALPEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDAVRRRKGLPVEEKVVQHGTKQRTRARKV 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2643g00022 1022 CDD EF2_II 402 517 - -
Gabi2643g00022 1022 CDD aeEF2_snRNP_like_IV 603 887 - -
Gabi2643g00022 1022 Pfam Elongation factor Tu domain 2 435 514 IPR004161 GO:0005525
Gabi2643g00022 1022 CDD EF2 14 236 - -
Gabi2643g00022 1022 Gene3D Yeast translation eEF2 (G' domain) 228 337 - -
Gabi2643g00022 1022 SUPERFAMILY EF-G C-terminal domain-like 530 604 IPR035647 -
Gabi2643g00022 1022 Gene3D - 627 877 IPR014721 -
Gabi2643g00022 1022 FunFam Translation elongation factor 2 531 607 - -
Gabi2643g00022 1022 SMART EFG_C_a 880 969 IPR000640 -
Gabi2643g00022 1022 FunFam Elongation factor like GTPase 1 879 1014 - -
Gabi2643g00022 1022 CDD EF2_snRNP_III 532 603 - -
Gabi2643g00022 1022 Gene3D - 879 1013 - -
Gabi2643g00022 1022 Gene3D Elongation Factor G (Translational Gtpase), domain 3 531 607 - -
Gabi2643g00022 1022 FunFam Elongation factor 2-like protein 4 216 - -
Gabi2643g00022 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 352 IPR027417 -
Gabi2643g00022 1022 CDD eEF2_snRNP_like_C 883 962 - -
Gabi2643g00022 1022 SUPERFAMILY EF-G C-terminal domain-like 883 981 IPR035647 -
Gabi2643g00022 1022 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 11 243 IPR000795 GO:0003924|GO:0005525
Gabi2643g00022 1022 Gene3D Translation factors 354 529 - -
Gabi2643g00022 1022 Pfam Elongation factor G C-terminus 881 965 IPR000640 -
Gabi2643g00022 1022 Pfam Elongation factor Tu GTP binding domain 12 351 IPR000795 GO:0003924|GO:0005525
Gabi2643g00022 1022 PRINTS GTP-binding elongation factor signature 61 69 IPR000795 GO:0003924|GO:0005525
Gabi2643g00022 1022 PRINTS GTP-binding elongation factor signature 15 28 IPR000795 GO:0003924|GO:0005525
Gabi2643g00022 1022 PRINTS GTP-binding elongation factor signature 97 108 IPR000795 GO:0003924|GO:0005525
Gabi2643g00022 1022 PRINTS GTP-binding elongation factor signature 81 91 IPR000795 GO:0003924|GO:0005525
Gabi2643g00022 1022 PRINTS GTP-binding elongation factor signature 133 142 IPR000795 GO:0003924|GO:0005525
Gabi2643g00022 1022 SUPERFAMILY Ribosomal protein S5 domain 2-like 606 882 IPR020568 -
Gabi2643g00022 1022 FunFam Elongation factor like GTPase 1 228 337 - -
Gabi2643g00022 1022 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 9 1021 - -
Gabi2643g00022 1022 Gene3D - 4 216 IPR027417 -
Gabi2643g00022 1022 SUPERFAMILY Translation proteins 395 526 IPR009000 -
Gabi2643g00022 1022 NCBIfam small GTP-binding protein domain 12 144 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2643g00022 Gabi-Chr2643 239174 247235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2643g00022 7 1022 Eukaryotic Initiation Factors Gene Family AT3G22980 70.165 0.0 1455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2643g00022 K14536 - pvu:PHAVU_003G003900g 1677.92