Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2643g00019 ATGGAATTGGAAAGAGGTTTCTGGCATCCTCTGTTGTTCTTGCTTTTGATTTATTCTCTGTCGCGCTGTGTTTCTGGCATCGATGCTGAATATGCACAGTGCAACTGTGATGAGGAAGGGCTTTGGAGTATACAGAGCATCCTCGTTTGTCAAAAAGTCAGCGACTTTTTCATTGCCATTGCATATTTTTCCATACCCATTGAACTACTTTACTTCGTTAGCTGCTCCAATGTTCCATTCAAATTGGTCTTCCTCCAGTTTATTGCCTTCATAGTCCTCTGCGGAATGACCCATTTGCTCAATGCCTATACTTACTACGGGCCTCACTCCTTCCACTTGTTGCTCTCCCTCACCGTTGCTAAGTTCTTTACTGCTCTTGTTTCCTGTGCCACTGCAATTACCTTTCCCACCCTGATTCCTCTTCTTCTGAAAATCAAAGTGAGGGAGCTCTACTTGAGGCAGAATGTCTTGGAATTGGGCCAAGAGGTTGGGATCATGAAGAAACAAAAGGAAGCAAGCTGGCATGTTAGGATGCTCACCCGCGAGATTAGAAAGTATCTGGACAAGCACACCATATTGTATACCACCCTTGTTGAGCTTTCCAAGGCTTTGGACTTGCATAATTGTGCGGTTTGGATGCCTGATGAGGACAGGCGAGAAATGCATTTAACTCATGAGTTGAAACAAAGATCAGCAAAGAATTTTCACAGCTCTATTCCTATAAATGATCCGGATGTACTAGAGATAAGAAAGAGCAAGGGGGTGCGGCTTTTGAGGCCTGATTCTGCACTAGGAGCTGCAAGTAGTGGTGGATCTGGGGACTCGGGTGCTGTAGCGGCCATTCGCATGCCGATACTTCATGTTTCGAATTTCAAAGGAGGGACACCAGAGTTGGTTGAAACATCTTATGCTATACTGGTTTTGGTTCTTCCAAATTCAAACTCCAGGGTTTGGACCTCCCATGAGATGGAGATAGTGGAAGTAGTTGCTGACCAGGTGGCTGTAGCCTTGTCTCATGCGTCCGTTCTCGAAGAGTCTCAGCTAATGAGCCAGAAACTCGCAGAGCAAAACCGGGCATTGCAACAGGCTCAAAAGAATGCAATGATGGCCAGCCAGGCAAGGATCTCATTTCAGAAAGTGATGAGTCATGGAATGCGGAGACCTATGCATTCAATCCTCGGTTTACTTTCAATGTTTCAAGAGGACAATTTAAGATCTGAACAGAAGATTGTTATTGACACAATGTTGAAAGTTAGCAATGCACTCTCAAGTTTGATTAATGATGTAATGGAGATTTCTGCAAATGACAAAGGAAACTTCCGGTTAGAGATGAAACCTTTCCATCTACATTCCATGATCAGGGAAGCTTCTTGCATAGCCAAGTGTTTGTGTGTATACAAAGGCTTTGGTCTTGAAATTGATGTCCACAAGTCTTTGCCTGATCTGGTCTTGGGTGATGAGGCAAGGTCTTTTCAAGTAATTCTGCATATGATTGGCTATTTATTGAACATATATGACAGAGGGACTCTCATTTTTCGAGTTTTTCTTGAAAGTGATAATGGAGATAAGGATGATAAAAATTTTGGAATATGGAGATCAAGAATGCAAAATGATTATGTGTATGTAAAATTTAATTTTCAGATAACTGGTATTAGTTCCTACTCAGATGAATCAATTTCAACAAAAAATCAGGTTGGTAGGAGGCACTACAACTATGAAACTAAGGAGGGCCTGAGCTTCAGCATGTGCAAAACGCTGGTGCAGATGATGCAAGGTAATATCTGGATATCACCAAACTCTCTAGGTTTGGCACAAGGGATGACACTTCTTCTCAAGTTTCAGATAGGACCATCACTTGGAAGATTCATTCTTGCTCCTAAAGATTTTTCGAACTCACAGTCACAGTTTAGAGGGCTTAAGGTTGTAGTAGCTGACGACGATGATGTAAACAGGACTGTGACCAAGAAGCTGCTTGAGAAGCTGGGTTGTCAAGTAACTGCTGTTTCATCAGGGTTTGAGTGCCTGGGTGCTATAAGTGCCTCTGGCAACTCATTTAAAATTATCCTGTTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAGAAGGATTCGGAAATTCCACAGCCGTAATTGGCCCTTGATTATAGCTCTTACAGCAAGTGCAGAAGAAAACTTGAAGGAGAAATGCATACAGGTGGGAATGCATGGATTGATTCAAAAACCTATCCTCCTTCATGAGATAGAAGATGAACTTGGAACGGTCCTGCGACGTACAGGCATGTTATCCATGGCATAA 2304 0.4266 MELERGFWHPLLFLLLIYSLSRCVSGIDAEYAQCNCDEEGLWSIQSILVCQKVSDFFIAIAYFSIPIELLYFVSCSNVPFKLVFLQFIAFIVLCGMTHLLNAYTYYGPHSFHLLLSLTVAKFFTALVSCATAITFPTLIPLLLKIKVRELYLRQNVLELGQEVGIMKKQKEASWHVRMLTREIRKYLDKHTILYTTLVELSKALDLHNCAVWMPDEDRREMHLTHELKQRSAKNFHSSIPINDPDVLEIRKSKGVRLLRPDSALGAASSGGSGDSGAVAAIRMPILHVSNFKGGTPELVETSYAILVLVLPNSNSRVWTSHEMEIVEVVADQVAVALSHASVLEESQLMSQKLAEQNRALQQAQKNAMMASQARISFQKVMSHGMRRPMHSILGLLSMFQEDNLRSEQKIVIDTMLKVSNALSSLINDVMEISANDKGNFRLEMKPFHLHSMIREASCIAKCLCVYKGFGLEIDVHKSLPDLVLGDEARSFQVILHMIGYLLNIYDRGTLIFRVFLESDNGDKDDKNFGIWRSRMQNDYVYVKFNFQITGISSYSDESISTKNQVGRRHYNYETKEGLSFSMCKTLVQMMQGNIWISPNSLGLAQGMTLLLKFQIGPSLGRFILAPKDFSNSQSQFRGLKVVVADDDDVNRTVTKKLLEKLGCQVTAVSSGFECLGAISASGNSFKIILLDLHMPEMDGFEVARRIRKFHSRNWPLIIALTASAEENLKEKCIQVGMHGLIQKPILLHEIEDELGTVLRRTGMLSMA 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2643g00019 767 ProSiteProfiles Histidine kinase domain profile. 380 617 IPR005467 -
Gabi2643g00019 767 Coils Coil 343 373 - -
Gabi2643g00019 767 PIRSF Ethylen_sen_hybr_HK 8 765 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Gabi2643g00019 767 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 30 760 - -
Gabi2643g00019 767 Gene3D - 639 766 - -
Gabi2643g00019 767 Pfam GAF domain 190 337 IPR003018 GO:0005515
Gabi2643g00019 767 CDD HATPase_ETR2_ERS2-EIN4-like 479 611 - -
Gabi2643g00019 767 FunFam Ethylene receptor 637 761 - -
Gabi2643g00019 767 SMART HisKA_10 373 438 IPR003661 GO:0000155|GO:0007165
Gabi2643g00019 767 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 358 439 IPR036097 GO:0000155|GO:0007165
Gabi2643g00019 767 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 442 599 IPR036890 -
Gabi2643g00019 767 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
Gabi2643g00019 767 Gene3D - 339 436 - -
Gabi2643g00019 767 CDD REC_ETR-like 650 754 - -
Gabi2643g00019 767 SMART REC_2 639 754 IPR001789 GO:0000160
Gabi2643g00019 767 ProSiteProfiles Response regulatory domain profile. 640 758 IPR001789 GO:0000160
Gabi2643g00019 767 FunFam Ethylene receptor 4 340 434 - -
Gabi2643g00019 767 Pfam Response regulator receiver domain 641 751 IPR001789 GO:0000160
Gabi2643g00019 767 SUPERFAMILY GAF domain-like 191 340 - -
Gabi2643g00019 767 Gene3D - 437 616 IPR036890 -
Gabi2643g00019 767 Gene3D - 166 338 IPR029016 -
Gabi2643g00019 767 SMART gaf_1 188 347 IPR003018 GO:0005515
Gabi2643g00019 767 Pfam His Kinase A (phospho-acceptor) domain 377 437 IPR003661 GO:0000155|GO:0007165
Gabi2643g00019 767 SUPERFAMILY CheY-like 635 760 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2643g00019 Gabi-Chr2643 216256 220707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2643g00019 24 759 Miscellaneous Gene Families AT3G04580 62.651 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2643g00019 GAF 1.5e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2643g00019 K14509 - gmx:100805023 1265.37