Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2643g00018 ATGGAACCTAACGACAACCAATTCAACTCCTACTTCCACCATCACCATCACCAACACCAACACCAACACCAGCAGCTCCACCAGCAACAGCAGAGCACAGCCACGACCACCAACGTTACTGGCCCGACAACAACCGCGTTGCCAACGAATGGTTTGTTGTCGAACACGGATGGGTCCCACATACTGTACCCTCATTCGGTTGCATCTGCGGTGTCGTCGCAGCTGGAACCGGCGAAGAGGAAGAGAGGGAGACCGAGGAAGTACGGCACACCGGAACAAGCTCTCGCTGCGAAGAAAGCTGCTACGTCGTCGTCTCAGTCGTTCTCCGCTAGCCCCAGGGACAAGAAGCCGCCACAATCTTCCTTCTCTTCCTCTCCTTACAGCACCACCACCACTTCCAAGAAATCTCATTCCTTTGCTATAGGCAATGCAGGACAAGGCTTCACTCCACATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTTATGCAACAAAGTAGGCGTGAGATGTGCATTTTGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGTCAGCCAGCAACCTCAGGAGGCAACATTACGTATGAGGGTCGATTTGAGATTATTTCACTAACTGGTTCCTATGTCCGTAACGAACTTGGAGGCCGAACTGGTGGTCTCAGTGTATGCCTATCTAATACTGATGGTCAAATCATAGGTGGTGGAGTTGGTGGGCCCCTTAAAGCGGCTGGTCCAGTTCAGGTCATCGTTGGTACATTTTTTATTGACACCAAGAAGGATAGTGGTGCTGGTGTAAAAGGTGATGCCTCTGCCAGCAAGTTGCCATCGCCAGTTGGCGAATCACCATCGAGTTTAGGTTTCCGCCAAACAGTTGACTCTTCCAGCGGGAATCCAATCCGGGGCAATGATGAGCATCAAGATATAGGGGGAAGTCATTTCATGATTCAGCAACTTGGTTTGCATGTGACGCCTCCCCGGTCCACAGACTGGGGGAGTCATCAGGATTCAAGAAATGCTGGCTTTGAGCTAACAGGAAGAACAGGTCATGGGGCACACCATTCTCCTGAGAATGGGGGCTATGAGCAAATTCCTGATTGA 1119 0.5058 MEPNDNQFNSYFHHHHHQHQHQHQQLHQQQQSTATTTNVTGPTTTALPTNGLLSNTDGSHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATSSSQSFSASPRDKKPPQSSFSSSPYSTTTTSKKSHSFAIGNAGQGFTPHVIAVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNELGGRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDTKKDSGAGVKGDASASKLPSPVGESPSSLGFRQTVDSSSGNPIRGNDEHQDIGGSHFMIQQLGLHVTPPRSTDWGSHQDSRNAGFELTGRTGHGAHHSPENGGYEQIPD 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2643g00018 372 MobiDBLite consensus disorder prediction 268 315 - -
Gabi2643g00018 372 MobiDBLite consensus disorder prediction 1 52 - -
Gabi2643g00018 372 MobiDBLite consensus disorder prediction 331 372 - -
Gabi2643g00018 372 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 260 IPR005175 -
Gabi2643g00018 372 MobiDBLite consensus disorder prediction 24 52 - -
Gabi2643g00018 372 MobiDBLite consensus disorder prediction 283 308 - -
Gabi2643g00018 372 Gene3D - 150 273 - -
Gabi2643g00018 372 CDD DUF296 149 260 IPR005175 -
Gabi2643g00018 372 SUPERFAMILY AF0104/ALDC/Ptd012-like 146 260 - -
Gabi2643g00018 372 MobiDBLite consensus disorder prediction 97 134 - -
Gabi2643g00018 372 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 19 298 IPR039605 GO:0003680
Gabi2643g00018 372 MobiDBLite consensus disorder prediction 70 134 - -
Gabi2643g00018 372 MobiDBLite consensus disorder prediction 331 348 - -
Gabi2643g00018 372 ProSiteProfiles PPC domain profile profile. 144 285 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2643g00018 Gabi-Chr2643 205675 211036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2643g00018 35 372 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 51.213 3.32e-91 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2643g00018 - - gmx:100809675 527.324