Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2643g00015 ATGTTTAAGCTATCTCGCGTGCTGCCTTCAAGTTGCAGCAGGCATCAGCTATTGGAAGTGTTGTCGTCTAGGAAAGTTGAAGTTAGAGACTGTCTACGGCATCGGCATGATACCTATTCAGCTGGGTTTTCTACTGCTACAAATAACTATGCTGCTAAAGGATACACTTCGGATCGGATATTTGCTCCTTATTGTGTTTACAAGGGAAAAGCTGCATTCTCATTGAGTCCTTGTCTTCCGACTTTCACCAAGTTGGATTCTGGGGTTGTCGTAGTTGAACGGCGCGGTTCAATGATGATGATTTTCATGCATGCTGTTGGGGAGCGCAAATATGACCGGGAGAAGAAACAGAGATTTGCTCTCTCGGCAACTGAAGTTGGTTCTTTGATAACCATGGGCCCCCAAGATTCCTGTGAATTCTTTCATGACCCTGCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAAGCGAACAACAATGGCTATTTCGTGTCTTTGACTGTTGTCAACAACCTGTTAAATACCAAAGAATACTTTAATGTTCCAGTCACAACTGCTGAATTTGCTGTGATGAAAACAGCTTGCAGTTTTGCATTGCCGCACATTATGGGTTGGGACCGTCTGACAAATCAGCAATCCAGAGGCACAGTTGGAGGCACAGTTGGCTTTCAATCAAAGGTGGATCCACAAGTTTTAGACTTGGAATGGGAAAAGTGA 732 0.4344 MFKLSRVLPSSCSRHQLLEVLSSRKVEVRDCLRHRHDTYSAGFSTATNNYAAKGYTSDRIFAPYCVYKGKAAFSLSPCLPTFTKLDSGVVVVERRGSMMMIFMHAVGERKYDREKKQRFALSATEVGSLITMGPQDSCEFFHDPAMLSSNAGQVRKSLSIKANNNGYFVSLTVVNNLLNTKEYFNVPVTTAEFAVMKTACSFALPHIMGWDRLTNQQSRGTVGGTVGFQSKVDPQVLDLEWEK 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2643g00015 243 SUPERFAMILY ssDNA-binding transcriptional regulator domain 57 217 IPR009044 GO:0003677|GO:0006355
Gabi2643g00015 243 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 20 243 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gabi2643g00015 243 Gene3D Transcriptional Coactivator Pc4; Chain A 50 220 IPR009044 GO:0003677|GO:0006355
Gabi2643g00015 243 Pfam Whirly transcription factor 66 198 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2643g00015 Gabi-Chr2643 177242 180782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2643g00015 57 243 Whirly Transcription Factor Family AT1G71260 63.492 5.16e-84 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Gabi2643g00015 Whirly 3.3e-50 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2643g00015 K26561 - gmx:100817863 372.089