Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2642g00025 ATGTGTAGGACGCCACGCTGTGAGAAGGTAGGGTTGAAAAAAGGACCATGGACTCTGGAAGAAGACAAGAAGCTCATGGCTTATGTTCAAGAACATGGCCATGGAAACTGGCGTTCGTTGGCCACCAAAGCTGATCTTCAAAGATGTGCAAAGAGTTGCCGACTGAGATGGATTAACTATCTCAAACCTGACATAAAACGAGGAAGCTTCAGCTTGGAAGAAAACCGCACTATTATACAACTCCATGCTCTTCTTGGAAACAAATGGTCATTGATAGCAGCTCACTTGCCCAAGAGAACAGACAATGAAATCAAGAACTATTGGAACACACATATCAAGAAAAAGCTTATGAGAATGGGCATAGACCCCATTACTCACAAACCAATAACCAACACCAATACGAGCCACATGGCACAGTGGGAGAGTGTAAGACTCGAAGCTGAAGCAAGAGAATCCATGTTGCAAGTTGGAACCTGCTCCTCCCATCAAACTCGGTTAATCTTAAGCAAAATATTACCACCACCACCGCCATCACCATGTCTAGATGTAATCAAAGCATGGCAAAGTTCACAGTCATCAGAGTCACCATCAACCACAAATAACAACAACAACAACAAAATGAATAACATGTATGCCATCATGCTTGCCACAGATGACCTACAATCGCCAGTATCCACTTTGAGCTTCCCCGGTAAGAAGCTTCCTGTTTCAACCAATATTGGGAAATTCACAGAAAGCTCACTCTCAAATGAGTGTGATGGTAATAATAACATCATAGAAACTTATAATGTGTCAAACTTGCAAGACGATAACATTATGCTGGCGGTGGAAGCATTTAGAGCTACAAGACGTGAGAGTGTTCCAGAACTGGTTAACAGTGCCACTGCTATGGAAGAAGGTCCAATTAATGATTCCTTTGAAGAATACCAAAACTTTCCATTAGTGGAACACTGCTTACCATGCACACTTGGATAA 975 0.4226 MCRTPRCEKVGLKKGPWTLEEDKKLMAYVQEHGHGNWRSLATKADLQRCAKSCRLRWINYLKPDIKRGSFSLEENRTIIQLHALLGNKWSLIAAHLPKRTDNEIKNYWNTHIKKKLMRMGIDPITHKPITNTNTSHMAQWESVRLEAEARESMLQVGTCSSHQTRLILSKILPPPPPSPCLDVIKAWQSSQSSESPSTTNNNNNNKMNNMYAIMLATDDLQSPVSTLSFPGKKLPVSTNIGKFTESSLSNECDGNNNIIETYNVSNLQDDNIMLAVEAFRATRRESVPELVNSATAMEEGPINDSFEEYQNFPLVEHCLPCTLG 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2642g00025 324 FunFam MYB-related transcription factor 13 66 - -
Gabi2642g00025 324 CDD SANT 69 112 IPR001005 -
Gabi2642g00025 324 CDD SANT 16 61 IPR001005 -
Gabi2642g00025 324 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi2642g00025 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi2642g00025 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi2642g00025 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi2642g00025 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 245 - -
Gabi2642g00025 324 Gene3D - 13 66 - -
Gabi2642g00025 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi2642g00025 324 FunFam MYB transcription factor 68 129 - -
Gabi2642g00025 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi2642g00025 324 SMART sant 66 114 IPR001005 -
Gabi2642g00025 324 SMART sant 13 63 IPR001005 -
Gabi2642g00025 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi2642g00025 324 MobiDBLite consensus disorder prediction 187 206 - -
Gabi2642g00025 324 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2642g00025 Gabi-Chr2642 255053 256567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2642g00025 1 150 MYB Transcription Factor Family AT3G01140 69.136 5.85e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2642g00025 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2642g00025 K09422 - gmx:100792464 336.65