Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2642g00022 ATGGAGGGCAGCACAAGCTCTGAACTCCCACCTGGCTTCAGGTTTCACCCAACTGATGAGGAACTAATCGTTTACTACCTTTGTAACCAAGCCACATCAAAGCCATGCCCTGCATCCATCATCCCAGAAGTGGATATCTATAAATTTGATCCATGGGAATTGCCTGATAAAACAGACTTTGGAGAAAATGAATGGTATTTCTTTAGCCCAAGAGAGAGGAAGTATCCAAATGGGGTGAGGCCTAATAGAGCAACAGTTTCTGGGTATTGGAAGGCTACTGGCACAGACAAAGCAATCTATAGTGGGTCTGAACATATTGGGGTGAAGAAAGCTTTGGTTTTTTACAAGGGTAGGCCACCAAAGGGTCTAAAGACAGATTGGATCATGCATGAGTATAGATTAATTGGATCAAAAAGACAACCTAGCAGGCAAATTGGGTCCATGAGACTGGATGACTGGGTCTTGTGTAGGATCTATAAGAAGAAGAACAATGGAAAATCATTGGAGGTGAAAGAGGAGTACACAACAGCACAAATCAATCTGACACCAGCAAATGATGATAGTGAACAGGAAATAATGAAATTTCCAAGGACATGTTCCCTTACTCAACTTTTGGATATGGATTACTTGGGTCCAATATCACAGATATTATCTGATGGATCATATAATTCAACCTTTGATTTTCAAATTAATGCTGCCAATGTTGGAATGGACCCATTTGCAAGACCACCACAGCTGCTTGAAATGACTAACCCTTATGCAGCAGATTCAGGAAAGTACCAAGTGAAACAGAATAGCAACATCAACCAGACGATATTTATGAACCAAGTGTATGATTAG 840 0.4083 MEGSTSSELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPDKTDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKAIYSGSEHIGVKKALVFYKGRPPKGLKTDWIMHEYRLIGSKRQPSRQIGSMRLDDWVLCRIYKKKNNGKSLEVKEEYTTAQINLTPANDDSEQEIMKFPRTCSLTQLLDMDYLGPISQILSDGSYNSTFDFQINAANVGMDPFARPPQLLEMTNPYAADSGKYQVKQNSNINQTIFMNQVYD 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2642g00022 279 SUPERFAMILY NAC domain 6 161 IPR036093 GO:0003677|GO:0006355
Gabi2642g00022 279 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Gabi2642g00022 279 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Gabi2642g00022 279 FunFam NAC transcription factor 18 165 - -
Gabi2642g00022 279 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Gabi2642g00022 279 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2642g00022 Gabi-Chr2642 219920 221521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2642g00022 1 216 NAC Transcription Factor Family AT1G69490 68.421 3.77e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2642g00022 NAM 4.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2642g00022 - - gmx:732552 497.664