Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2642g00011 ATGAAGTCATGGCCAGAAAGTGTTATATTCTCTTCACAAGAAACCCAAAATGGCCTCAGCTGTTACCCTTTTTCAATGGAAATGGTCTATGCAGACAAGGGGTCTCTCTCTCTTAGCTCCAACTACGGTATGGTTTCAACCGTTTCTTCATCTCAAGAGAGTTATGCAAGCAAGAGCCATGTGATGGAAAATGGGAGTACTGGCTGGACTTATCCAATTATGATGGAGTGCCTTTCCAAAAACTTTGAAGAACACCCCAATATAGATGATGGGGTTGGGGAAAACAGTGAAAAAATAAACTATAATGAAAACTTCAACATAGGGAACCCTAATGAGAATCCTGTAAGCGGCAAAGAGGTGGATAGTGAACAGTCCAAACTCTGTGGTAGAGGGCATTGGAGGCCTGCAGAAGATTCAAAGTTGAAGGAACTTGTGGCTCTTTATGGTCCTCAGAACTGGAACTTGATAGCTGAGAAGTTGGAAGGAAGATCAGGGAAGAGTTGTAGGCTGAGATGGTTCAACCAGTTGGACCCAAGGATCAATAGGAGCGCATTCAGTGAAGAAGAGGAAGAACGGTTAATGCAGGCACATAGAATTTACGGCAACAAATGGGCAATGATTTCTAGGCTTTTCCCTGGAAGAACAGATAATGCTGTCAAGAATCACTGGCATGTTATAATGGCAAGAAAATACAGAGAACAATCCAGTGGTTACAGGAGAAGGCGATTGAGCCAATCTGTTTACAGAAGAATGGAGCTAAATCCAAGCTTTGTCTGCAGAGGTACCGCAACACAAACAGAATTATCATCACCCTATTGTCTCAATCTCCCCAAACCCAATGGAGTACTCAATAAAAACATGAATAGTTTTCAATATGATGCATCCATCCATGGAACAGGTGGTGGAGTTGAGTATGGCTTAAATGGGAGAGAAGCAATGTCAAGCAGCGAGATTGGCTTATATGTTCAACAGGCACCATTTGATTACTTCTCTGGTGCTAGAAGCAATGACATGGTGGGAGAGTCTTTCAGCAGGATTGTTGATAAAAATCAATATCATCATCCACTATATGGTTTCTACCCTCATTATCCCCAACAACATCTGATGGCAATGCAACATCCAAACAATAACAATTTTTACAGTTTCTCAAATTCCTCGGCATCAACAACACCCAATGTTTCGGCCAGGGAACCATCATGGTCATCATCAGTCGTAGAAAACAGAGAAAAAATCGTGATTAGTGACCCCCCAGATGCTGTTCCACCTCCATTTTTTGACTTCCTTGGAGTAGGAGCCACATGA 1302 0.4232 MKSWPESVIFSSQETQNGLSCYPFSMEMVYADKGSLSLSSNYGMVSTVSSSQESYASKSHVMENGSTGWTYPIMMECLSKNFEEHPNIDDGVGENSEKINYNENFNIGNPNENPVSGKEVDSEQSKLCGRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRSAFSEEEEERLMQAHRIYGNKWAMISRLFPGRTDNAVKNHWHVIMARKYREQSSGYRRRRLSQSVYRRMELNPSFVCRGTATQTELSSPYCLNLPKPNGVLNKNMNSFQYDASIHGTGGGVEYGLNGREAMSSSEIGLYVQQAPFDYFSGARSNDMVGESFSRIVDKNQYHHPLYGFYPHYPQQHLMAMQHPNNNNFYSFSNSSASTTPNVSAREPSWSSSVVENREKIVISDPPDAVPPPFFDFLGVGAT 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2642g00011 433 FunFam MYB transcription factor 130 181 - -
Gabi2642g00011 433 ProSiteProfiles Myb-like domain profile. 130 176 IPR001005 -
Gabi2642g00011 433 Pfam Myb-like DNA-binding domain 133 193 - -
Gabi2642g00011 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 231 IPR017930 -
Gabi2642g00011 433 Gene3D - 130 181 - -
Gabi2642g00011 433 SMART sant 129 178 IPR001005 -
Gabi2642g00011 433 SMART sant 181 229 IPR001005 -
Gabi2642g00011 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 176 IPR017930 -
Gabi2642g00011 433 CDD SANT 133 174 IPR001005 -
Gabi2642g00011 433 CDD SANT 184 224 IPR001005 -
Gabi2642g00011 433 ProSiteProfiles Myb-like domain profile. 177 227 IPR001005 -
Gabi2642g00011 433 FunFam MYB transcription factor 183 252 - -
Gabi2642g00011 433 SUPERFAMILY Homeodomain-like 130 223 IPR009057 -
Gabi2642g00011 433 Gene3D - 183 250 - -
Gabi2642g00011 433 PANTHER MYB PROTEIN-RELATED 122 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2642g00011 Gabi-Chr2642 110687 112476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2642g00011 17 279 MYB Transcription Factor Family AT1G69560 51.986 2.39e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2642g00011 Myb_DNA-bind_6 5.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2642g00011 K09422 - vvi:100253313 462.611