Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2642g00010 ATGCCTAAGGTTAATAACGACTCAGCCATAAAGCTGTTTGGTAGAACGATTTCTCTGTCACGTAACAGTGAGGTCTCTGCCAATGATTCTTCTTCTGAACCTGCTCCTCCGCTTCCCTTTGAAGATTGCTCTGATCATAGTCCTCCTTCATCTTCATCTTCTCCACGTGAAGTGAACTCTTCAAAAGAACATGAAGCAGTCAGGGATAAGGAACCATCAAGGAAAAAACTCACCTCAGTACAAGATGATGAGGCCTCACATCAAACCACAGAGGATTTAAAGTCTCCCACATCTTCAGACATTTTTGAGAACCCTAAGACTCCCTCAGCTGAAAGAGAGAGTTCTCTACCAAAATCCTCTAAAAATGGAGAACATAGCGACACAACAAGTGTGTCACAAGACAAAACTCCAAAGAAACCAGACAAGATACTGCCATGCCCACGATGCAACAGCATGGACACCAAATTTTGTTACTACAACAATTACAATGTCCACCAACCTCGTCACTTCTGCAAGAGCTGCCAGAGATACTGGACTGCTGGAGGAACCATGAGGAACATGCCTGTAGGTGCCGGTCGCCGCAAGAACAAAAACTCTTCTGTTGCCTCACATTATCGCCAAATCATGGTTCCTGAGGCCCTTCAAACAGCTAAATTCAACGCAGCCAATGTGTTGTCCTTTGGATCAGATTCTCCTCTATGTGATTCCATGGCTTCTTCTTTGAGCCTTGCTGAGAAAACACAAAATGGTGTCCTAAATGGGTTTCATGCACCTAAGAAGAATATGTTTGTTTCCTATGGTGGAGAAGATAGTAATGGGGATGATAACTCAGTTGGAGCTTCTGTTATAGCTTCAACTTCATCTGAGAAGAGAGACAATGCCGGCTCACATGAATCAGTTGATAAGAGTTATCAAGGTTTCCCTCCTCAGTTGCACTTCCCTGGTTCTTCTTCCCCTTGGCCTTATCCATGGAACCCTGCAATGCATCCATATGCATTTTGCCAACCAACATATCCTATGTCATTCTATCCAGCACCAGCATATTGGGGTTTATACTCTATCTCTCCCCAATCTTCTGTTAACCATTCTGATCCAAATTCATCTACTTTGGGGAAACACTCAAGGGATGGGGATATCCTCTTTCCACACAACTTACAGAAAGAAAAGCCTGCCACAGAAAGTAACAACTCACGGAATAATAGAGTGTTGATCCCCAAGACACTGAGAATTGATGACCCTAATGAAGCTGCAAAGAGTTCTATATGGTCAACACTAGGAGTCAAGAATGAGAAGGGAAATTCAACCAATGGAGGAGGAGGCCTTTTCCAGGCATTTTCATCCAAGGGTGGTGGTGACAAGAATCATATGGTTGAAACATCCTCAGTGTTGCAAGCCAACCCTGCAGCTTTATCAAGGTCTCTTATCTTCCATGAGAGGACCTAA 1443 0.4373 MPKVNNDSAIKLFGRTISLSRNSEVSANDSSSEPAPPLPFEDCSDHSPPSSSSSPREVNSSKEHEAVRDKEPSRKKLTSVQDDEASHQTTEDLKSPTSSDIFENPKTPSAERESSLPKSSKNGEHSDTTSVSQDKTPKKPDKILPCPRCNSMDTKFCYYNNYNVHQPRHFCKSCQRYWTAGGTMRNMPVGAGRRKNKNSSVASHYRQIMVPEALQTAKFNAANVLSFGSDSPLCDSMASSLSLAEKTQNGVLNGFHAPKKNMFVSYGGEDSNGDDNSVGASVIASTSSEKRDNAGSHESVDKSYQGFPPQLHFPGSSSPWPYPWNPAMHPYAFCQPTYPMSFYPAPAYWGLYSISPQSSVNHSDPNSSTLGKHSRDGDILFPHNLQKEKPATESNNSRNNRVLIPKTLRIDDPNEAAKSSIWSTLGVKNEKGNSTNGGGGLFQAFSSKGGGDKNHMVETSSVLQANPAALSRSLIFHERT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2642g00010 480 PANTHER CYCLIC DOF FACTOR 2 5 480 IPR045174 GO:0003700|GO:0006355
Gabi2642g00010 480 MobiDBLite consensus disorder prediction 285 308 - -
Gabi2642g00010 480 MobiDBLite consensus disorder prediction 359 373 - -
Gabi2642g00010 480 MobiDBLite consensus disorder prediction 1 145 - -
Gabi2642g00010 480 MobiDBLite consensus disorder prediction 359 380 - -
Gabi2642g00010 480 ProSiteProfiles Zinc finger Dof-type profile. 144 198 IPR003851 GO:0003677|GO:0006355
Gabi2642g00010 480 ProSitePatterns Zinc finger Dof-type signature. 146 182 IPR003851 GO:0003677|GO:0006355
Gabi2642g00010 480 Pfam Dof domain, zinc finger 141 198 IPR003851 GO:0003677|GO:0006355
Gabi2642g00010 480 MobiDBLite consensus disorder prediction 58 90 - -
Gabi2642g00010 480 MobiDBLite consensus disorder prediction 11 33 - -
Gabi2642g00010 480 MobiDBLite consensus disorder prediction 91 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2642g00010 Gabi-Chr2642 99031 102684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2642g00010 7 478 C2C2-Dof Transcription Factor Family AT5G39660 39.567 2.35e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi2642g00010 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2642g00010 - - lang:109358999 653.669