Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2642g00008 ATGGATCTGCAGAACATGCAAAATCAAAGTGTGCATTTTGTTCTGTCCACTGATGCCAAACCAAGGCTAAAATGGACTCCTGAGCTTCACCAACGATTCATTGAGGCGACTAATCAGCTTGGAGGTGCACATAAGGCAACCCCAAAGAGTCTTATGAGGGTGATGGGAATTCCAGGACTTACTTTGTACCACCTGAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGTCAACAGCTAGAAACCGGCTCTGACAACAAACAAGATGATTACAGAGAAATCAAGAGCAGTGATGGTCATTGCAGCAGGGAAATCAGTATTGGGGCCCAGAATCAAATTACTGAAAACTTGCAGATAGCTCAGGCTCTCCAAATGCAAATGGAAGTACAAAGGGAACTTAATGAACATATTGAGGTGCAGAAACATTTGCAGCTTAGAATTGAAGCTCAAGGGAAGTATTTACAATCAGTGCTAATAAAGGCACAGGAAGCACTTGCAAGATACAATTCTTCCCCAGTGGGTATAGAACTCACAAAAGCTGAACTTTCTCAGCTAGTTACAATAATCAACAATGCTTGTCCGCGTTCTCCCATCTCAGAACTGACAGAAACAAGAGGGTTAAGCTTAAACTGTGGGGAGATGAAACAAGACATAGGAACTATGTCTTCACTGGAAAGTTCTTTAACATCTTTTGAAAGCTGTGGGAGAAAGGAAGAGAAAGAACCAACGGAAGAAATAGGGTACTTAAATTCCAATACTATTTCACTTGAATTGCCATTAATGACCATTGGAGATTCAAGTAGTGAAGCTAGTGGGAGAAAGAGAAGTGCAGCAACCAAATCTGATGGTAGCTGTGTCGAGCAACCATATGGGAAAAGATGTGACAACAATTTGAGGAAAACCAAGTTGTCAGAAATGCTTGACTTGAACAGCCAATACCAAAGTGACATGGACTCCACAAGTTCAAAAACATTAGACTTAAATTGCAGTTTAAGCTTTTGGGAACCATGA 1011 0.4085 MDLQNMQNQSVHFVLSTDAKPRLKWTPELHQRFIEATNQLGGAHKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQLETGSDNKQDDYREIKSSDGHCSREISIGAQNQITENLQIAQALQMQMEVQRELNEHIEVQKHLQLRIEAQGKYLQSVLIKAQEALARYNSSPVGIELTKAELSQLVTIINNACPRSPISELTETRGLSLNCGEMKQDIGTMSSLESSLTSFESCGRKEEKEPTEEIGYLNSNTISLELPLMTIGDSSSEASGRKRSAATKSDGSCVEQPYGKRCDNNLRKTKLSEMLDLNSQYQSDMDSTSSKTLDLNCSLSFWEP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2642g00008 336 Pfam MYB-CC type transfactor, LHEQLE motif 117 163 IPR025756 -
Gabi2642g00008 336 Pfam Myb-like DNA-binding domain 22 73 IPR001005 -
Gabi2642g00008 336 MobiDBLite consensus disorder prediction 265 283 - -
Gabi2642g00008 336 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Gabi2642g00008 336 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Gabi2642g00008 336 MobiDBLite consensus disorder prediction 265 287 - -
Gabi2642g00008 336 FunFam Myb family transcription factor 19 77 - -
Gabi2642g00008 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 276 IPR044848 GO:0003700
Gabi2642g00008 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 77 IPR017930 -
Gabi2642g00008 336 Gene3D - 19 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2642g00008 Gabi-Chr2642 58363 60018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2642g00008 13 328 G2-like Transcription Factor Family AT1G69580 45.921 1.14e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi2642g00008 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2642g00008 - - gmx:100784670 523.857