Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2642g00006 ATGGCTTCTGATGCTGAGGTTTCTGAGATTTCCTCTCTGTTTGAAAGGATGGTGAGAAACAGAGACATGTCTCTGTTCTTGCCCTTCATCTTTGGCTTCTCAGACTCTTCAACCAGAAGAGATAGTGAAGACCCAGATCAGGAAACTGAGAGTGCTGAAGATTCTCAGCGTGAAAGAATCATCTTGGTGAACCCCTTCACTCAGGGCATGGTGGTCATTGATGGTGCTTCAAGCCTTGAGGCTCTGTTCCGTGAGCTTGGGAATAGTACCAAGGGTGGTCAACCACCTGCTTCAAAGGAATCCATAGATGCTATGCCAAGTGTTGAAATTGGAGAAGGTGAAGATTTGGAGTGTGTTGTTTGTCTGGATAATTTTGAGGTTGGTGGGGTGGCTAAAGAGATGCCTTGTAAGCATAGATTTCATACCAATTGTATTGAGAAATGGCTGGGGATTCATGGGTCTTGCCCTGTTTGCAGGTATGAGATGCCTGTTGATGAGAAAGATGTGGGCAAGAAGAGTGATGAAGAAGGGGGAGAGAGGAGGAGGGTTGGTGGAGAAGTTTGGGTTAGTTTTTCTTTCAATAGGGATAGGAGAAGCCAGGATCCAAATCAAGATACTTCTGATGATTCAAGTGATTCTTCAAGTCATAGAGGTGATGCTGAGCCAGAGAGTTAA 675 0.4504 MASDAEVSEISSLFERMVRNRDMSLFLPFIFGFSDSSTRRDSEDPDQETESAEDSQRERIILVNPFTQGMVVIDGASSLEALFRELGNSTKGGQPPASKESIDAMPSVEIGEGEDLECVVCLDNFEVGGVAKEMPCKHRFHTNCIEKWLGIHGSCPVCRYEMPVDEKDVGKKSDEEGGERRRVGGEVWVSFSFNRDRRSQDPNQDTSDDSSDSSSHRGDAEPES 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2642g00006 224 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
Gabi2642g00006 224 SMART ring_2 118 158 IPR001841 -
Gabi2642g00006 224 MobiDBLite consensus disorder prediction 166 185 - -
Gabi2642g00006 224 MobiDBLite consensus disorder prediction 37 56 - -
Gabi2642g00006 224 MobiDBLite consensus disorder prediction 192 224 - -
Gabi2642g00006 224 MobiDBLite consensus disorder prediction 34 56 - -
Gabi2642g00006 224 MobiDBLite consensus disorder prediction 198 224 - -
Gabi2642g00006 224 MobiDBLite consensus disorder prediction 166 183 - -
Gabi2642g00006 224 Pfam Ring finger domain 117 159 IPR001841 -
Gabi2642g00006 224 SUPERFAMILY RING/U-box 104 165 - -
Gabi2642g00006 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 43 163 - -
Gabi2642g00006 224 FunFam E3 ubiquitin-protein ligase RNF181 86 165 - -
Gabi2642g00006 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 165 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2642g00006 Gabi-Chr2642 47560 48516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2642g00006 1 201 C3H Transcription Factor Family AT1G26800 53.846 1.98e-69 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2642g00006 - - ccaj:109816232 293.123