Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2639g00003 ATGGATTTTCTAAATCTTCTCATGTCCGTTGTTGGTAAAGTAGGAGCTGCGTCTATTATAGAGCATGCAGGTTATTTGATATCCTATGAAGGCAATTACCAGAAGCTAGAAGATAATGTTAAGAAGCTTGAGGATGCAAGAGAAAGAATGAACCATTTGATTGATGAAGAAAAAAGGAACGGAAAAAAAATTGAAAATGATGTGCTGAACTGGTTGGAGAATGTGAATGAGGTTATTGAAGAGGCAAATAAGCTTAAGGAAGATCCTCATCGTGCAAACATTGGGTGCTCTGAGTGGTTGTTCCCCAATTTGTGTTTTCGACATCAACTTAGCATGAAAGCTACAAAGAGGGCAAAAGATGTTGTTAAAGTGCAGGAAGAAGGGAAGTTCGATCGAGTTGGTTACCTTCCTCCCCTAGATGGAGTAGCCTCATCTTCTGGCACAGTTGGTAGTGACAAACTTGATACAAGGGAGTCAATTAAGGAGCGAATTATGCATGCTTTAAGAGATCCTGCAGTACGCAACATTGGGGTCTATGGGTTGGGCGGTATGGGTAAGACCCACATGGTGAAGCAAATTGCTCAAATAGCTAAGCAAATACAATTGTTTGATGCAGTAGTTATGGCAAATGTATCCAAAACTCCAGACCTGAAAACAATTCAAGGGGAGATTGCAGATTTGTTGGGTCTGCGGTTTAATGAGGAGACTGTTGTTGGTAGAGCATCGCGCCTAAAGCAGAGAATTATAGCAGAGAAAACTATTCTTGTCGTTCTTGATGATATATGGACAAAACTTGATTTGGAGAAAGTGGGAGTTCCATCTGGGGATGAACACAATGCTTGCAAACTACTGTTGACCTCCAGGAATCAGGATATGTTTCTGGAGATGGATGCTCGAAGGGATTTTAAACTTGAAGTTTTGAATGAAGCAGAAACATGGAGCTTGTTTCAAACTATGGCTGGGAATGTGGTTAAGGATATCAATTTGCAAAATGTGGCAACTCAAGTGGCTGAAAAATGTGCAGGTTTGCCTCTTCGGCTAGTGACTGTAGCTCGGGCATTGAAAAATAAGAATATTCATGCTTGGAATGATGCATTAAGGCAATTAGAAAGTGTTGATCATGAGGGGATGGATGCAATAACTTATTCTGCTTTGGAATTGAGTTACAAATCATTAGAGAGTGATGAAATGCGGGCAATCCTTTTGCTTACTGCTGTGTTGGGATCTGGGAATAGTGTAGAGTATTTATTGAAAATTTCAATGGGTTTGGGCATATTCAAGAATATAAATATTGTGAAAAATGCTAGAGACAGACTTTACAAAATAATTGGATCCTTGAAGGCATCTTGTTTGTTGCTCGAAGATGACACGCATGAGCATATCCAAATACATGACCTTGTTCGTGAAGTAGCTAACTCCATAGCTATTAGAGATCAAAGTGTATTTGTGGTGCAACCGAATACTGAGTTGAAGGAATGGCCAACAAAGAATTTTCTAGAAAGGTGCCAGCAAATCATCTTAAATATGTGTCATATCCTTGAGCTTCCTCAAAAGTTAGATTGTCCTAATGTGAAGCTTTTTTACTTGTATAGTGCTGATCGCTTTTTAGAAATCCCAAATACTATTTTTCAGGGAATGGAAAGCCTCAAAGCATTAGATGTAACACGCTTTAACTTGTCTTCATTACCCACTTCTTTTCGGTCCTTAACTAAACTTCAAACCTTGTGTTTGGATCAATGTGTTCTGGAAAATATGGAAGAAATAGGAGCTTTGGAAAATTTAAAAATTCTCTCCATTAGTTACTCTTCTATGATCAAATTGCCAAGTGAAATAGGGAAATTGACTAATCTAATAATGCTTGATTTGAGCCATTCTGGAATTGAATTCTTCCCACCTAACATCATATCAAGCTTGACTAAATTGGAGGAGTTGTATATGGGCAACACCTCCATTAAGTGGGAGGTTGAGAATTCAGCTAAGCAAAATGAAAGTGTCAGCCTGGCCGAGCTTCGAAAATTGCCCAACTTAACTGCTTTAGAATTACAAATTCCTGAGGCTGAGATTTGGCCAAAGGACTTGATGTTTCATAAGCTAGAAAGATATAAAATAGTTATAGGAGATATGTGGGAATGGTCTGACAATGAGGATGTGACCCTGAATACATTGAAGCTCAAACTTGATACCGACATACATACGGAGCATGCGATTAAAGCATTGATTCAAAGGGTCGAGAATTTGCACTTGGATGAAGTAGATGGAATTTCAAATGTGCTTTATCAGTTGAATAGGGAAGGATTTCCATTGTTGAAGCATCTCCACATCCAAAATAATGCAAACATAAAGCACATTGTCGACTCTACGGGTAGAAATCAAGTCCAGGTTTCGTTTCTCAACTTGGAAACCCTAGTCCTTCACAATCTGAAAAACTTGGAGAAGATATATAATGGCCCTCTTGCAATTGATTCTTTTGGCAAGCTTAGAGTCATCAAAGTTCAAAATTGTATCCAATTAGAATATCTTTTCTCCTTTTCAATGGTTAAAGGGCTTTCTCAACTTTTGGAGATTGAAGTTTGTCAATGCAATAATATGAGGAAGATAGTGCTTGAAGATTGCAATGCAAGTACAGTAAACGATAAGATTGAGTTTCTTCCCGTGCGTTCTTTGACCTTGCAGCATTTGCAGAATCTTGACAATTTCTTCTCTTATGAGTTGACGTCCTCCGTAACCAAGCATCAACGGTTGGAGACTAGTATTCTTGTCCCGTTTTTTAGTTCTCAGGTTGCATTACCTAATTTGGATACCCTTAAGTTGAGCTCACTCAATTTGAGCAAAATTTGGGATGACAATCAACCTTCTGTTTCCAAATTGTCAAACTTGATTGTGGAGAATTGTGGTGGGCTGAAGTACTTATTCTCGACCGCAATGGTTGGAAATTTTATGAATCTCAAACGGCTTGAAATTAATAAATGTCATTTGATGGATGAGATAATTTCTAGTGATGATGCAAAGAGAAACAATGGAATAACTACTTCAGTAAATGAGGTTCGATTTTCCAAATTGGAGACAATCATATTGAAGGACATGGAAAACTTGGAGATGATATGGCATCACCAATTTGACACAGTGAAGACATTACAAGTTAAAAACTGTGAGAAAATTGTAGTGGTTTTTCCTTCTTCAATTCAAAAAACATACCATATTTTAGAGTTGTTAGAGGTTACAGATTGTGCTTTAGTGGAAGAGATATTCGAAATTACTTCCAATGAAAAGAGCTGTATAGAGGATACAACACACCTCAAAACAATTTTTTTAGAAAACTTGCCAAAGCTGAGAAGGACATGGAGTAGGGATCCTCAAGGAATTCTTAGTTTCCGTAATCTAGAAAACGTATATGTAACAAGTTGTGGAAGATTGGACTATCTATTTCCACTTTCTCTTGCCACTCACTGCTCAAATCTCAAAGAACTTTCTGTGAAGCGGTGTGGGAACATGAAGGAAATTGTTGCAGAGAAGGAAGGATCCATGTTGACAACTCTCACATTTGAGTTTAATGAACTAAATACTTTATTGCTTTGGAGCTTACCGAAACTCAAGGGTTTCTATGCTGGAAATCATACTTTAGCATGTCCATCTATGAGAAAAATAGATGTTTCTGGGTGTGCAAAATTGAATTTATTCAGCACTGTATCCTCAAGTAGCCACGAAAGGCTTCCAGATAGTAAACTCCCTTTTTCAGTGCAACAATCTCATTTCAGGGTCGAAGAG 3765 0.3801 MDFLNLLMSVVGKVGAASIIEHAGYLISYEGNYQKLEDNVKKLEDARERMNHLIDEEKRNGKKIENDVLNWLENVNEVIEEANKLKEDPHRANIGCSEWLFPNLCFRHQLSMKATKRAKDVVKVQEEGKFDRVGYLPPLDGVASSSGTVGSDKLDTRESIKERIMHALRDPAVRNIGVYGLGGMGKTHMVKQIAQIAKQIQLFDAVVMANVSKTPDLKTIQGEIADLLGLRFNEETVVGRASRLKQRIIAEKTILVVLDDIWTKLDLEKVGVPSGDEHNACKLLLTSRNQDMFLEMDARRDFKLEVLNEAETWSLFQTMAGNVVKDINLQNVATQVAEKCAGLPLRLVTVARALKNKNIHAWNDALRQLESVDHEGMDAITYSALELSYKSLESDEMRAILLLTAVLGSGNSVEYLLKISMGLGIFKNINIVKNARDRLYKIIGSLKASCLLLEDDTHEHIQIHDLVREVANSIAIRDQSVFVVQPNTELKEWPTKNFLERCQQIILNMCHILELPQKLDCPNVKLFYLYSADRFLEIPNTIFQGMESLKALDVTRFNLSSLPTSFRSLTKLQTLCLDQCVLENMEEIGALENLKILSISYSSMIKLPSEIGKLTNLIMLDLSHSGIEFFPPNIISSLTKLEELYMGNTSIKWEVENSAKQNESVSLAELRKLPNLTALELQIPEAEIWPKDLMFHKLERYKIVIGDMWEWSDNEDVTLNTLKLKLDTDIHTEHAIKALIQRVENLHLDEVDGISNVLYQLNREGFPLLKHLHIQNNANIKHIVDSTGRNQVQVSFLNLETLVLHNLKNLEKIYNGPLAIDSFGKLRVIKVQNCIQLEYLFSFSMVKGLSQLLEIEVCQCNNMRKIVLEDCNASTVNDKIEFLPVRSLTLQHLQNLDNFFSYELTSSVTKHQRLETSILVPFFSSQVALPNLDTLKLSSLNLSKIWDDNQPSVSKLSNLIVENCGGLKYLFSTAMVGNFMNLKRLEINKCHLMDEIISSDDAKRNNGITTSVNEVRFSKLETIILKDMENLEMIWHHQFDTVKTLQVKNCEKIVVVFPSSIQKTYHILELLEVTDCALVEEIFEITSNEKSCIEDTTHLKTIFLENLPKLRRTWSRDPQGILSFRNLENVYVTSCGRLDYLFPLSLATHCSNLKELSVKRCGNMKEIVAEKEGSMLTTLTFEFNELNTLLLWSLPKLKGFYAGNHTLACPSMRKIDVSGCAKLNLFSTVSSSSHERLPDSKLPFSVQQSHFRVEE 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2639g00003 1255 Gene3D Ribonuclease Inhibitor 714 999 IPR032675 -
Gabi2639g00003 1255 PRINTS Disease resistance protein signature 175 190 - -
Gabi2639g00003 1255 PRINTS Disease resistance protein signature 589 605 - -
Gabi2639g00003 1255 PRINTS Disease resistance protein signature 248 262 - -
Gabi2639g00003 1255 PRINTS Disease resistance protein signature 340 354 - -
Gabi2639g00003 1255 Pfam Leucine rich repeat 593 650 IPR001611 GO:0005515
Gabi2639g00003 1255 Pfam Leucine rich repeat 533 580 IPR001611 GO:0005515
Gabi2639g00003 1255 SUPERFAMILY L domain-like 463 1159 - -
Gabi2639g00003 1255 Coils Coil 68 88 - -
Gabi2639g00003 1255 Pfam NB-ARC domain 158 390 IPR002182 GO:0043531
Gabi2639g00003 1255 Gene3D - 306 393 IPR042197 -
Gabi2639g00003 1255 SMART AAA_5 172 310 IPR003593 GO:0016887
Gabi2639g00003 1255 Gene3D - 150 303 IPR027417 -
Gabi2639g00003 1255 Coils Coil 26 60 - -
Gabi2639g00003 1255 Gene3D Ribonuclease Inhibitor 1000 1242 IPR032675 -
Gabi2639g00003 1255 Gene3D Ribonuclease Inhibitor 458 700 IPR032675 -
Gabi2639g00003 1255 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1068 1229 - -
Gabi2639g00003 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 400 IPR027417 -
Gabi2639g00003 1255 SUPERFAMILY L domain-like 1017 1221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2639g00003 Gabi-Chr2639 95780 100483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2639g00003 173 478 WRKY Transcription Factor Family AT5G45050 24.920 2.57e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2639g00003 - - mtr:25482804 1467.6