Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2637g00101 ATGAGCCCGACGAAGCGAAAAAGTCGAGATACCGAGGACTCTGAGTGCCACAGTGAAGATGTTGAGGAAGAATCAGCAGGTGTTAAAAAGTCGGCTCCTACACGAAGAGGTATGGGCTCCAAGAGAAGTCGTTCAACTGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATATTAAAACCCTTCAACTCCAACTTCAAGTACTCTTTCTCTCTATTCTTTTTACGCAGATAATGTCAATGGGAGCTGGTTTATATATGCCTACGATGATGTTACCTGCGGGAATGCAGCACATGCATGCACTGCATATGGCTTCTTTAGCACCTATGGATGTTGGCATGCAAATGGGTGGAATGGGTTATGGAGTGGGCATGCCTGATGTTAATGGTGGATCTTCTAGATTCCCAATGGTTCAGGTACCCCAAATGCAAGGAACTCATCTTCCTATTGCACATACTTCTGTACCCACTTCTTTACATGAGAATCGTCAAGTGTTTGGGTTTCCTGGTCAGGGATTCCCCATGCCAATGCCACGTGCTCCATTAGTTTCTTTTCCAGGAGAGCCTCTTATGAAGTCATCAACTTTAGGACTAAATTCCAGTGGAACAGCAGGACTTATGCAAACTGTGGATTCTGCTTCAGCCTCCACCTTAAAGGATCCAATTCCAAATATGAACTCACAAGTTGTGCAAAACAATGGCTGTAATTTAACAAGTCGGAGGTCTACGCAGTGTGAAGCAACAATTGACGGATTTGAACACTCGAATTCGGTATATAATAGTGGTAAGGCAAATGACAGTGGTGCTGATAATCCCAGTAAAGAAGATAATCTTGTGCTTGATAAATCTTGTGATGATTGA 954 0.4287 MSPTKRKSRDTEDSECHSEDVEEESAGVKKSAPTRRGMGSKRSRSTEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYIKTLQLQLQVLFLSILFTQIMSMGAGLYMPTMMLPAGMQHMHALHMASLAPMDVGMQMGGMGYGVGMPDVNGGSSRFPMVQVPQMQGTHLPIAHTSVPTSLHENRQVFGFPGQGFPMPMPRAPLVSFPGEPLMKSSTLGLNSSGTAGLMQTVDSASASTLKDPIPNMNSQVVQNNGCNLTSRRSTQCEATIDGFEHSNSVYNSGKANDSGADNPSKEDNLVLDKSCDD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2637g00101 317 SMART finulus 50 99 IPR011598 GO:0046983
Gabi2637g00101 317 Gene3D - 39 100 IPR036638 GO:0046983
Gabi2637g00101 317 MobiDBLite consensus disorder prediction 289 317 - -
Gabi2637g00101 317 FunFam Basic helix-loop-helix transcription factor 39 102 - -
Gabi2637g00101 317 CDD bHLH_AtPIF_like 44 116 IPR047265 -
Gabi2637g00101 317 PANTHER TRANSCRIPTION FACTOR PIF3 4 271 IPR044273 GO:0003700|GO:0006355
Gabi2637g00101 317 MobiDBLite consensus disorder prediction 289 303 - -
Gabi2637g00101 317 MobiDBLite consensus disorder prediction 40 60 - -
Gabi2637g00101 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 93 IPR011598 GO:0046983
Gabi2637g00101 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 109 IPR036638 GO:0046983
Gabi2637g00101 317 Pfam Helix-loop-helix DNA-binding domain 48 94 IPR011598 GO:0046983
Gabi2637g00101 317 MobiDBLite consensus disorder prediction 1 60 - -
Gabi2637g00101 317 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2637g00101 Gabi-Chr2637 883607 885795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2637g00101 5 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 56.831 8.66e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2637g00101 HLH 3.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2637g00101 K12126 - gmx:100794974 379.793