Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2637g00092 ATGTCCTCCTCAAGGACTAGTCCATCATCCAGCAAAAATGCAGACAGATCAAGACACAGTGATAGGGTTATTGCTCAGACCCCTGTAGATGCAAAACTTCATGCAGCTTTTGAGGAGTCTGGTAGTTCCTTTAACTACTCCAATTCAGTGAGGTTTTCTTCTGGTACAGCTAGTGGAGGAGAACATCAACCAATGTCTGACACAGTAACAACAGCTTATCTCCATCAGATACAGAAAGGCAAGCTGATCCAACCTTTCGGGTGCTTGCTAGCTTTAGATGAGAAAACATGCAAGGTCATTGCCTATAGTGAGAATGCACCTGAAATGTTGACCATGGTTAGTCATGCTGTCCCCAATGTTGGTGACCACCCTGCTCTTGGCATTGGCACTGACATAAGAACTATTTTCACTGCCCCAAGTGCTTCTGCGTTACAGAAGGCACTAGGATTTGGGGAGGTTTCACTTCTTAACCCCATCCAAGTCCATTGCAAGACTTCCGGAAAGCCCTTTTATGCAATTATCCATCGCGTTACTGGTAGTTTGATCATCGATTTTGAGCCAGTCAACCCTCATGAAGTTCCCATGACTGCAGCAGGTGCCTTGCAATCTTACAAGCTTGCAGCAAAAGCAATAACTCGATTGCAATCTTTGCCTAGTGGGAGCATGGAAACGCTATGTAATACAATGGTTCATGAAGTTTTTGAACTCACAGGTTATGACAGGGTGATGGTTTATAAATTTCATGAGGATGATCATGGGGAAGTGATTGCTGAGGCCACAAAACCTGGCCTAGAGCCATATTTGGGTTTGCATTATCCAGCCACTGATATCCCCCAGGCTTCACGCTTTTTATTTATGAAGAACAAGGTCCGCATGATAGTTGATTGTCGTGCAAAGCATGCGAAGGTGCTTCAAGATAAACAAATTCCATTTGATTTAACTTTGTGTGGATCAGCCTTAAGGGCTCCTCACAGTTGCCATTTGCAGTATATGGAGAACATGAAATCAAGGGCTTCCCTGGTTATGGCAGTTGTGGTCAATGACAGTGATGAAGACGGGGATAGCTCTGATGCTGTTCAGCCACAAAAGAGAAAGAGACTCTGGGGTTTAGTAGTTTGCCATCACACTACTTCCAGGTTTGTTCCCTTTCCTCTTAGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAATTAGAGTTAGAATGTCAGATTATTGAGAAGAATATCCTGCACACCCAAGCACTCTTGTGCGATATGCTGATGCGAGATGCACCCCTAGGTGTTGTAACGCAGAGCCCTAATATAATGGATCTTGTGCAATGTGATGGAGCAGCCCTCTTGTATAAAAACAAGGTATGGAAATTAGGGGTAACACCAAGTGAATCCCAGATACGAGAGATAGCACTATGGCTCTCTGAATGCCATATGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTAATGCCGGGTTCCCAGGGGCTGCTGCTCTTGGTGATATTGCATGTGGAATGGCAGCCGTGAGAATAGCTTCCAAAGACATAGTTTTCTGGTTTCGGTCACACACTGCTGCAGAAATCCGATGGAGTGGTTTAAAGCATGAAAGAGATGATGGTAGGAAAATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGCTTACCATGGAAGGACTATGAAATGGATGCTATTCATTCATTGCAACTAACACTGAGAAACGCATTCAACGATACAGAGAGTATGGATATAAACACTAATGCTAATGATACAAGACTAAATGGTTTGAAGATTGAAGGGATGCAAGAACTGGAAGCGGTGGCAAGTGAGATGGTTAGGTTAATTGAAACAGCAACTGTGCCAATTCTGGCAGTTGATATTGACGGGATGGTCAATGGATGGAATGCAAAAATTGCTGAGTTAACAGATCTTCCAGTTGCGGAAGCTATTGGAAAGCATTTACTCACGCTTGTTGAGGATTTTTCAACAGATAGAGTCAAGAAGATGTTGGAAATGGCACTGCAGGGTGAAGAAGAGAAGAATGTCCAATTTGAGATCAAAACACATGGTTTGAAGATTGATTCTGGTCCTGTCAGCTTGGTAGTTAATGCTTGTGCAAGCAGGGATCTTCAAGATAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACAGTCATGGACAAGTTCACCCGGATTGAAGGAGACTACAAGGCAATTGTACAGAACCCAAACCCATTGATCCCCCCAATATTTGCCACAGATGAATTTGGCTGGTGTTGTGAATGGAATTCAGCTATGACAAAATTAACTGGATGGACGCGAAAGGAGGTGATGGATAAAATGCTCTTAGGAGAGGTTTTTGGGACCCAGATGGCTTGTTGTCGTCTAAAGAATCAAGAAGCTGTTGTTAATTTTAGCATTGTACTTAATAAAGCAATGACTGGTTTGGATACAGAGAAGGTTGCTTTTGGTTTCTTTACTCGGAATGGGAAGTATGTAGAATGCCTGCTTTCTGTGAGTAAGAAATTAGACATAGAGGGTGTAGTTAATGGGGTGTTCTGCTTCTTGCAGCTAACTAGTCCAGAGTTGCAACGAGCACTACATATTCAGCACCTAGCTGAACAGACTTCCTCGAAGGCAATGAAAGCTTTAACTTATGTGAAAAGGCAAATCCGGAATCCTTTATGTGGTATTGTGTTCTCCCAGAAATTGTTAGAGGATACTGAGTTGGGAACTGACCAAAAACAACTTCTGCTCACTGGCACACAGTGCCAACGCCAGCTTAGCAAAGTTCTTGATGATTCAGATCTTGACAGCATCGTGGATGGCTACTTGGATTTGGAGATGGTTGAATTCACAGTGCATGAAGTTTTGGTTGCCTCCCTAAGTCAAGTCATGACAAAGAGTAATGCAAAGGGTATCCAAGTAGTCAATGATGTTGCACAGCAGATCTTGGCTGAAACCTTTTATGGTGATAGTCTTAGGCTTCAGCAGGTCATAGTAGACTTTTTATTAATTTCCATCAATTTTACACCAACTGGAGGTCAGGTTGTTGTAGCAGCCTCTTTAACCAAAGATCAGTTAGGGAAATCAGTCCATCTTGCTAATTTGGAGCTCAGCATAACACATGATGGCATTGGGGTGCCAGAAGCATTGCTGAACCAGATGTTTGAACATGATGGACATGAATCCGAGGATGGTATTAGCCTCCTGGTCAGCAGAAAGATGCTAAAGCTCATGAATGGAGACGTACGTTATATAAGGGAAGCAGGCAAATCATCTTTCGTATTATCTGTTGAACTAGCCGCAGCCCATAAGTTAAGGACATAA 3375 0.4299 MSSSRTSPSSSKNADRSRHSDRVIAQTPVDAKLHAAFEESGSSFNYSNSVRFSSGTASGGEHQPMSDTVTTAYLHQIQKGKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPNVGDHPALGIGTDIRTIFTAPSASALQKALGFGEVSLLNPIQVHCKTSGKPFYAIIHRVTGSLIIDFEPVNPHEVPMTAAGALQSYKLAAKAITRLQSLPSGSMETLCNTMVHEVFELTGYDRVMVYKFHEDDHGEVIAEATKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCRAKHAKVLQDKQIPFDLTLCGSALRAPHSCHLQYMENMKSRASLVMAVVVNDSDEDGDSSDAVQPQKRKRLWGLVVCHHTTSRFVPFPLRYACEFLAQVFAIHVNKELELECQIIEKNILHTQALLCDMLMRDAPLGVVTQSPNIMDLVQCDGAALLYKNKVWKLGVTPSESQIREIALWLSECHMDSTGLSTDSLSNAGFPGAAALGDIACGMAAVRIASKDIVFWFRSHTAAEIRWSGLKHERDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLTLRNAFNDTESMDINTNANDTRLNGLKIEGMQELEAVASEMVRLIETATVPILAVDIDGMVNGWNAKIAELTDLPVAEAIGKHLLTLVEDFSTDRVKKMLEMALQGEEEKNVQFEIKTHGLKIDSGPVSLVVNACASRDLQDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFATDEFGWCCEWNSAMTKLTGWTRKEVMDKMLLGEVFGTQMACCRLKNQEAVVNFSIVLNKAMTGLDTEKVAFGFFTRNGKYVECLLSVSKKLDIEGVVNGVFCFLQLTSPELQRALHIQHLAEQTSSKAMKALTYVKRQIRNPLCGIVFSQKLLEDTELGTDQKQLLLTGTQCQRQLSKVLDDSDLDSIVDGYLDLEMVEFTVHEVLVASLSQVMTKSNAKGIQVVNDVAQQILAETFYGDSLRLQQVIVDFLLISINFTPTGGQVVVAASLTKDQLGKSVHLANLELSITHDGIGVPEALLNQMFEHDGHESEDGISLLVSRKMLKLMNGDVRYIREAGKSSFVLSVELAAAHKLRT 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2637g00092 1124 SMART HKATPase_4 1006 1118 IPR003594 -
Gabi2637g00092 1124 SUPERFAMILY GAF domain-like 201 401 - -
Gabi2637g00092 1124 Pfam Phytochrome region 417 588 IPR013515 GO:0006355|GO:0009584
Gabi2637g00092 1124 CDD PAS 761 872 IPR000014 -
Gabi2637g00092 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 869 IPR035965 -
Gabi2637g00092 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 321 330 IPR013516 -
Gabi2637g00092 1124 Pfam PAS fold 72 188 IPR013654 GO:0006355
Gabi2637g00092 1124 Gene3D PAS domain 611 748 - -
Gabi2637g00092 1124 Gene3D - 409 579 IPR043150 -
Gabi2637g00092 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 221 394 IPR016132 -
Gabi2637g00092 1124 Gene3D - 957 1121 IPR036890 -
Gabi2637g00092 1124 MobiDBLite consensus disorder prediction 1 23 - -
Gabi2637g00092 1124 SMART gaf_1 221 414 IPR003018 GO:0005515
Gabi2637g00092 1124 PIRSF Phytochrome_conventional 1 1124 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Gabi2637g00092 1124 Gene3D PAS domain 763 877 - -
Gabi2637g00092 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Gabi2637g00092 1124 Gene3D PAS domain 76 324 - -
Gabi2637g00092 1124 Pfam PAS fold 750 872 IPR013767 GO:0006355
Gabi2637g00092 1124 Pfam PAS fold 620 734 IPR013767 GO:0006355
Gabi2637g00092 1124 FunFam Phytochrome 409 542 - -
Gabi2637g00092 1124 Gene3D - 202 562 IPR029016 -
Gabi2637g00092 1124 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Gabi2637g00092 1124 SUPERFAMILY GAF domain-like 412 586 - -
Gabi2637g00092 1124 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
Gabi2637g00092 1124 NCBIfam PAS domain S-box protein 624 740 IPR000014 -
Gabi2637g00092 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 955 1110 IPR036890 -
Gabi2637g00092 1124 SMART pas_2 619 685 IPR000014 -
Gabi2637g00092 1124 SMART pas_2 749 818 IPR000014 -
Gabi2637g00092 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1114 IPR003594 -
Gabi2637g00092 1124 ProSiteProfiles Histidine kinase domain profile. 901 1120 IPR005467 -
Gabi2637g00092 1124 Pfam GAF domain 221 404 IPR003018 GO:0005515
Gabi2637g00092 1124 CDD PAS 628 734 IPR000014 -
Gabi2637g00092 1124 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Gabi2637g00092 1124 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Gabi2637g00092 1124 PRINTS Phytochrome signature 321 342 IPR001294 GO:0006355|GO:0009584
Gabi2637g00092 1124 PRINTS Phytochrome signature 434 454 IPR001294 GO:0006355|GO:0009584
Gabi2637g00092 1124 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Gabi2637g00092 1124 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Gabi2637g00092 1124 PRINTS Phytochrome signature 136 158 IPR001294 GO:0006355|GO:0009584
Gabi2637g00092 1124 PRINTS Phytochrome signature 236 255 IPR001294 GO:0006355|GO:0009584
Gabi2637g00092 1124 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Gabi2637g00092 1124 PANTHER OS08G0260000 PROTEIN 70 955 - -
Gabi2637g00092 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 77 190 IPR035965 -
Gabi2637g00092 1124 FunFam Phytochrome 613 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2637g00092 Gabi-Chr2637 795145 800888 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2637g00092 1 1121 Histidine Kinase Gene Family AT1G09570 75.111 0.0 1781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2637g00092 K12120 - gmx:100791098 1858.19