Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2637g00087 ATGGCTTCTACTTCTATCGTAGGTGTTTCCTCCATATATCAAACTCCCACTCCCTCTGTGGAACTATACAAGAGGTCTACTTCATCCGTCAGGTTGCAATTTCTAGACTCCAAGTCACACTTCAACAACCTCCTCAGAGCTCACCGTCACTTTGGGTTTAAGCCCACACTCACTTTTGTTCCTTCCGCCATTGCCACCCCTAATTCTTCTCTCCTCAGCGAAGAAGCTTTTAAAGGTATAGGTCGTGGCTTCGACGACGACGACGATGCCCAAAACGACGACGACTTTGGCTTTTCCTCTGAAACCGACGCTTCTTCTCCTAACCCCGATGAACTCGACATTTCCAAGCTCGGTTTGCCCTCCCGCCTTGTCGATTCACTCCGCAACCGTGGGATTACCCATCTTTTCCCCATCCAGAGAGCCGTGTTAGTACCTGCACTAGAAGGTAGAGATATCATTGCTCGGGCAAAGACTGGAACTGGGAAGACACTAGCATTTGGGATTCCAATTCTAAAAGGTCTCAGTGAAGATGAGCATGCAAGTCCTCTCAGGCGGTCTGGTCGTCTTCCTAGAGCATTGGTGCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGACAAAGAGATTAAAGAATCTGCGCCTTATCTAAACACAGTTTGTGTTTATGGGGGCGTTTCTTATGTTACCCAGCAAAGTGCTCTTACACGTGGCGTTGATGTAGTGGTTGGAACTCCTGGTAGAATAATTGACCTTATAAATGGGAACAGCCTTAGACTGAATGAGGTTCAGTATTTGGTCCTCGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAATAATTTTAGATAAGCTCCCACCTAAGAGGCAGAGCATGCTTTTTTCTGCAACCATGCCGGCTTGGGTGAAGAAATTGGCAAGAAAAAATTTGGACAATCCGTTGACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATATCAGCCACTGCCACTTCAAAGAGGACAATTCTTTCTGATCTTATAACCGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAAAGAGATGCTGATGAAGTATCATTGGTATTAACAAATAGTATAACTTCTGAAGCACTGCATGGTGATATATCCCAGCATCAGAGAGAGAGAACATTGAATGGTTTCAGGCAAGGAAAATTCACGGTGCTTGTTGCCACGGATGTTGCAGCCCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACTTTCGTACATCGCTCTGGTCGTACTGGGCGTGCAGGAAAAGAAGGCACTGCCATTGTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTTGGCTCCAAATTTGAATTTGTTAGCGCGCCAGCTATGGAAGAGATTTTGGAGTCATCTGCTGAGCAAGTTGTTGCCACACTTAAGGGAGTTCATCCTGAGTCTGTTGCGTTTTTCACCCCAACTGCACAAAAACTGATTGAAGAACAAGGAACAAGTGCCCTTGCAGCTGCACTAGCTCAGCTGAGTGGATTCTCCCAACCTCCGTCCTCCCGGTCTCTTATCAGCCATGAACAGGGATGGGTTACGTTGCAACTGACCCGAGATGATAATTCTAAAAGATTTTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTGCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCGGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCAGAGGACATTGCTAAAGAGTTGCTTAACAAGGAAATACCACCTGGAAACACTATTTCCAAGATCACCAAGTTACCTGCTCTGCAAGATGATGGACCTCCAGGTGATTTCTATGGGAAGTTTTCTGACAGAGATCGAAGTAACCGAAGAGGTACAGGTTCTAGGGATCGAAGAGGCTTTAAGACCTCACGGGGATGGGATGGGGGCCGAGACTCCGATGATGAGTTTGGTGATCCGTTTAAGAGAGGTGGTAGAAATGTTAGAACTGGCAACAGCTGGTCTCGAGCTGGAAAAAGCAGTGGCGATGATTGGCTAATAGGAGGTAGACGACCAAGCAGGTCTTCATCGTCAGACAGGTTATATTTTGGCGGGTCCTGTTTTGTTTGTGGGGAATCTGGGCATCGAGCATCGGATTGTCCAAATAAGCGAGGCTTTTAG 2271 0.4571 MASTSIVGVSSIYQTPTPSVELYKRSTSSVRLQFLDSKSHFNNLLRAHRHFGFKPTLTFVPSAIATPNSSLLSEEAFKGIGRGFDDDDDAQNDDDFGFSSETDASSPNPDELDISKLGLPSRLVDSLRNRGITHLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPILKGLSEDEHASPLRRSGRLPRALVLAPTRELAKQVDKEIKESAPYLNTVCVYGGVSYVTQQSALTRGVDVVVGTPGRIIDLINGNSLRLNEVQYLVLDEADQMLAVGFEEDVEIILDKLPPKRQSMLFSATMPAWVKKLARKNLDNPLTIDLVGDEEEKLAEGIKLYAISATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLVLTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIVMYTSSQRRTVRSLERDVGSKFEFVSAPAMEEILESSAEQVVATLKGVHPESVAFFTPTAQKLIEEQGTSALAAALAQLSGFSQPPSSRSLISHEQGWVTLQLTRDDNSKRFFSARSVTGFLSDVYSAAADEVGKIHLIADERVQGAVFDLPEDIAKELLNKEIPPGNTISKITKLPALQDDGPPGDFYGKFSDRDRSNRRGTGSRDRRGFKTSRGWDGGRDSDDEFGDPFKRGGRNVRTGNSWSRAGKSSGDDWLIGGRRPSRSSSSDRLYFGGSCFVCGESGHRASDCPNKRGF 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2637g00087 756 Pfam DEAD/DEAH box helicase 136 309 IPR011545 GO:0003676|GO:0005524
Gabi2637g00087 756 MobiDBLite consensus disorder prediction 626 732 - -
Gabi2637g00087 756 Pfam Helicase conserved C-terminal domain 346 454 IPR001650 -
Gabi2637g00087 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 320 IPR014001 -
Gabi2637g00087 756 SMART c2hcfinal6 736 752 IPR001878 GO:0003676|GO:0008270
Gabi2637g00087 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 509 IPR001650 -
Gabi2637g00087 756 SMART helicmild6 374 454 IPR001650 -
Gabi2637g00087 756 ProSiteProfiles Zinc finger CCHC-type profile. 737 752 IPR001878 GO:0003676|GO:0008270
Gabi2637g00087 756 Gene3D - 337 536 IPR027417 -
Gabi2637g00087 756 Gene3D - 724 755 - -
Gabi2637g00087 756 SUPERFAMILY Retrovirus zinc finger-like domains 718 755 IPR036875 GO:0003676|GO:0008270
Gabi2637g00087 756 Pfam Zinc knuckle 736 752 IPR001878 GO:0003676|GO:0008270
Gabi2637g00087 756 MobiDBLite consensus disorder prediction 91 112 - -
Gabi2637g00087 756 FunFam ATP-dependent RNA helicase RhlE 103 323 - -
Gabi2637g00087 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 475 IPR027417 -
Gabi2637g00087 756 FunFam Nucleolar RNA helicase II 342 532 - -
Gabi2637g00087 756 SMART ultradead3 131 337 IPR014001 -
Gabi2637g00087 756 Gene3D - 113 324 IPR027417 -
Gabi2637g00087 756 MobiDBLite consensus disorder prediction 648 693 - -
Gabi2637g00087 756 Pfam GUCT (NUC152) domain 541 640 IPR012562 GO:0003723|GO:0004386|GO:0005524
Gabi2637g00087 756 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 106 659 - -
Gabi2637g00087 756 CDD SF2_C_DEAD 334 463 - -
Gabi2637g00087 756 CDD GUCT_Hera 548 627 - -
Gabi2637g00087 756 CDD DEADc 123 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2637g00087 Gabi-Chr2637 751560 757216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2637g00087 117 471 Eukaryotic Initiation Factors Gene Family AT3G13920 38.056 1.10e-63 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2637g00087 - - gmx:100789516 1207.59