Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2637g00066 ATGACTGAGAAGATGCTTGACTCCACCCATCCAGGGATGAATGATCAAAGCTGCTCCCATCTAGCATCCATTTATGGCAAGGATTTCCTTGAGCTTGTATGGGGAAATGGTCAAATTCTTGTACAAGGAGGTTCATCAAGCAGAACACGAAAGACTCCTTCGTGCACTGAGGATTCAAAAAACCCTTCACGTAAAGAGGGAGCAATAGATGAAGATGCCAGCATTGCAAAAAGAACTCAAAGGGATTCTGACCTGAGCTCTTCAAATCAAAGCAATGGCCAAGATTCCCAAAGCAAGAGCTCCTCTAAGCTTAATGAAGAATCTGCATACTTAACACCAATAAAAGATTCTAAGCTCATTGCGGGAGCTACAAGTAATAGTCACTTGTGCACATACTCCTCACAACAGAGCTTACATTCAGCTCCACTCAAGAAACCAAGAATGGAATCAAGCCAAACACCAGCAACAAACTCACAGAAACAGTACTTGGGATGTGATCAAAGAACACGAAAGGTGAACTTCGCAAACTTTTTAATACCAGCAGTCTTTCTTAAACCCATTTATGAGGGAAACAATGCAAGAGTGGAAGAAATTGAAGTGGGAAAGGTTGAGAAAGCAGAAGCTGCTTCTACTAGTAGTAAAGATCTTGATCATTCCACACTGATTGAATCGGCTAAAGGATCACAAGGTCTCACAGGATTTCAAGAGCAAACATCTTTAACTGCTAACAAATCGAACCCAGCTTTGCTTGTTGAAAGAAGCATGGAACCACCCTTTGACGAGCACTCTGAAGCTGCTGGCCATAACTGTGCCCTTGGAAATAAAACCTCAAGCTCAGAAGCAGTTAAAGGAAGGGGAAAAGCTAATACTAACTTGTGTAGTGAACCCTTCCTAGCATCTTCTTCTGTATGCTCGCTTGGAGCCTCAAACGATCCAAACTTTGGTAGTAGGAAACATGAGGATACTGATGGTTCAACATATTTAAGTGATAGTGATGAAGAACCGGAAGAAGATATGGTAAAGCAAATGCCAGTTCGGCAGGGTAACAGAATCAAAAGAAGCAGGAATCCTGAGATTCATAACTTAACTGAAAGGAAGCGGAGAGATAAAATCAACAAGAAGATGCGTACATTGCAAGATCTCATACCTAATTGCAATAAGGTGGACAAAGCTTCAATGCTTGACGATGCTATCCAATATCTTAAGACCCTCAAGCTTCACTTACAGATTATGTCAATGGGTAGTGGGCTTTGTATGCCACTTATGATGTTACCTACCACCGCACATCATATTAATGCGCCAAATTTGCCACAGATGATGGGAGTTGGAATGGGTTTCAGGCCAGGCACAGGAATCCCTTGCAATCCAACACAGTTCCCTATTCCACCACAGTCTGGTATCACAGATAATGGACTTCAAATGTTTGGTTTCTCCAACCAAATACCATTCATGCCAATTCCTTATGCACCTTTCATTCCTAGTAATGGAAACTCTTCTACAGAACCTCTTTTGCCAACCAACCTGGCTGAGCATCTAGCTAATTCAGTCCCCAAGAACTCAAATCTTCACGCAAAGGCTGAATGTGCAACAAAGCAAGCACGGAATTACGTTTCCCTTCACCATAGCATTAGCCATCCCTTTGGTTTTCCCACAACAACAGAGGAAAAAATGAAAATGGATTGGTAG 1686 0.4211 MTEKMLDSTHPGMNDQSCSHLASIYGKDFLELVWGNGQILVQGGSSSRTRKTPSCTEDSKNPSRKEGAIDEDASIAKRTQRDSDLSSSNQSNGQDSQSKSSSKLNEESAYLTPIKDSKLIAGATSNSHLCTYSSQQSLHSAPLKKPRMESSQTPATNSQKQYLGCDQRTRKVNFANFLIPAVFLKPIYEGNNARVEEIEVGKVEKAEAASTSSKDLDHSTLIESAKGSQGLTGFQEQTSLTANKSNPALLVERSMEPPFDEHSEAAGHNCALGNKTSSSEAVKGRGKANTNLCSEPFLASSSVCSLGASNDPNFGSRKHEDTDGSTYLSDSDEEPEEDMVKQMPVRQGNRIKRSRNPEIHNLTERKRRDKINKKMRTLQDLIPNCNKVDKASMLDDAIQYLKTLKLHLQIMSMGSGLCMPLMMLPTTAHHINAPNLPQMMGVGMGFRPGTGIPCNPTQFPIPPQSGITDNGLQMFGFSNQIPFMPIPYAPFIPSNGNSSTEPLLPTNLAEHLANSVPKNSNLHAKAECATKQARNYVSLHHSISHPFGFPTTTEEKMKMDW 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2637g00066 561 MobiDBLite consensus disorder prediction 53 79 - -
Gabi2637g00066 561 MobiDBLite consensus disorder prediction 310 348 - -
Gabi2637g00066 561 Pfam Helix-loop-helix DNA-binding domain 360 404 IPR011598 GO:0046983
Gabi2637g00066 561 MobiDBLite consensus disorder prediction 80 107 - -
Gabi2637g00066 561 MobiDBLite consensus disorder prediction 137 161 - -
Gabi2637g00066 561 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 415 IPR036638 GO:0046983
Gabi2637g00066 561 PANTHER TRANSCRIPTION FACTOR PIF3 3 520 IPR044273 GO:0003700|GO:0006355
Gabi2637g00066 561 Gene3D - 351 412 IPR036638 GO:0046983
Gabi2637g00066 561 MobiDBLite consensus disorder prediction 41 107 - -
Gabi2637g00066 561 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983
Gabi2637g00066 561 SMART finulus 361 410 IPR011598 GO:0046983
Gabi2637g00066 561 CDD bHLH_AtPIF_like 355 417 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2637g00066 Gabi-Chr2637 544329 546754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2637g00066 203 516 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 34.769 3.62e-34 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2637g00066 HLH 4.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2637g00066 K12126 - gmx:100804665 406.757