Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2637g00065 ATGGGAAAAGCAACTAGTTCTTCCTCTTCTTCTATAAGCAGCAGCAGCAACCACCACCTAGTAATTTCCACTGCATCATCTCTCACACAGCTCAACACAGAAGAACTTCCTACAGATCTTAGGCTTGGACTGAGCATTTCCACCACTCAACATGTTGGCTCTCCTATTTCAAGGGGGCTATTAAATGATTGCAGCGATCATAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCAATTGGAAGAAAACTCAATATACTAGCTCATGATGGCTACAATGAGTTAGTAAAGACTCTTGAACACATGTTCGACACTACCATTCTATGGGGAACAGAGATGAACGGAGTGCAACCAGAGAGATGCCATGTGCTAACTTATGAAGACGAAGAAGGGGATTTGGTCATGGTTGGGGATGTCCCTTGGGAGTGA 432 0.4421 MGKATSSSSSSISSSSNHHLVISTASSLTQLNTEELPTDLRLGLSISTTQHVGSPISRGLLNDCSDHSSFFVKVYMEGIPIGRKLNILAHDGYNELVKTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWE 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2637g00065 143 ProSiteProfiles PB1 domain profile. 69 143 IPR000270 GO:0005515
Gabi2637g00065 143 Gene3D - 63 143 - -
Gabi2637g00065 143 Pfam AUX/IAA family 66 143 IPR033389 -
Gabi2637g00065 143 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 49 142 IPR003311 GO:0005634|GO:0006355
Gabi2637g00065 143 SUPERFAMILY CAD & PB1 domains 66 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2637g00065 Gabi-Chr2637 534713 535393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2637g00065 73 142 B3 DNA Binding Superfamily AT4G23980 40.000 5.28e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi2637g00065 AUX_IAA 6.9e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2637g00065 K14484 - gmx:100783140 216.468