Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2637g00064 ATGACGAAGTGGGAAATCGGTTCTTTGCAGAAATTACCCAAGAAGTTTACAAGGAGTTATGGAGATGGTTTGTCAAATCCAGTGTTTATCAAGCCTCCAGATGGCACTGAATGGAAAATGTATTGGACAAAACAGAACGATGAGGTTTGGTTCGAAAAGGGTTGGAAAGAATTCGTTGAAAATTACTCTCTAGATCATGGTTATTTGGTTTTGTTTAAATATGAAGGTACTTCACGGTTTGATGTACTCATACTTGACCAGAGTGCTCTAGAAATAGACTATCCTTCCAATGACAATTGTGACGAAAAGGATGATCATAACCAGAGTGACGATGAATCATTTAAAATTTTGGGGGGAATCCCTCAAAAAAAAAAGACCAGTCCAAAGTCACCACTGTTTTCTGCTCCATCTCGTAAGAAAATGAAATATGGGACTCATAAGAATATGGAAATTAGCTCCAATAAGCAAAAGTTGCATGCAGGTGATGAATCTGATCAAGGGACAAAGTTTCAAAAATCCGTCAAGCACCAACTGAAAGGTGTGAGAACTACTCAAAGAACTTCATCGTCGAATTGGCCCAAGGAAGATAGAGCTCAGGAAGTAGCTAAAAAATTCGTCTCATACGATCCTTTTTTCACGATGTTCATAAAGCCAGCTCATCTGTCAGCTCATGTAGTGAATGTAACGAAGTTCGTAAATAATGAGAGCAAGGAGCAGAATGTGATAATTCAGCTTGGGAAAAGATCGTGGCCTGTGAAGTGGATCAATTACGGTACATTTAACCGCTTCTCTTCTGGTTGGTCTTTGTTTGCAACAGAGAGTAAATTGCGAGCTGGAGATGTTTGCATCTTTGAGCTGATTGACAAACAAGTTCCTTTGTTGGAAGTTCATGTTTTCTAA 900 0.39 MTKWEIGSLQKLPKKFTRSYGDGLSNPVFIKPPDGTEWKMYWTKQNDEVWFEKGWKEFVENYSLDHGYLVLFKYEGTSRFDVLILDQSALEIDYPSNDNCDEKDDHNQSDDESFKILGGIPQKKKTSPKSPLFSAPSRKKMKYGTHKNMEISSNKQKLHAGDESDQGTKFQKSVKHQLKGVRTTQRTSSSNWPKEDRAQEVAKKFVSYDPFFTMFIKPAHLSAHVVNVTKFVNNESKEQNVIIQLGKRSWPVKWINYGTFNRFSSGWSLFATESKLRAGDVCIFELIDKQVPLLEVHVF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2637g00064 299 Gene3D - 4 89 IPR015300 -
Gabi2637g00064 299 MobiDBLite consensus disorder prediction 152 172 - -
Gabi2637g00064 299 Gene3D - 191 299 IPR015300 -
Gabi2637g00064 299 SMART B3_2 211 297 IPR003340 GO:0003677
Gabi2637g00064 299 SMART B3_2 9 88 IPR003340 GO:0003677
Gabi2637g00064 299 Pfam B3 DNA binding domain 215 291 IPR003340 GO:0003677
Gabi2637g00064 299 Pfam B3 DNA binding domain 11 84 IPR003340 GO:0003677
Gabi2637g00064 299 MobiDBLite consensus disorder prediction 96 195 - -
Gabi2637g00064 299 ProSiteProfiles B3 DNA-binding domain profile. 248 299 IPR003340 GO:0003677
Gabi2637g00064 299 ProSiteProfiles B3 DNA-binding domain profile. 1 88 IPR003340 GO:0003677
Gabi2637g00064 299 PANTHER B3 DOMAIN-CONTAINING 11 298 - -
Gabi2637g00064 299 MobiDBLite consensus disorder prediction 173 195 - -
Gabi2637g00064 299 SUPERFAMILY DNA-binding pseudobarrel domain 210 298 IPR015300 -
Gabi2637g00064 299 MobiDBLite consensus disorder prediction 96 112 - -
Gabi2637g00064 299 CDD B3_DNA 248 299 IPR003340 GO:0003677
Gabi2637g00064 299 SUPERFAMILY DNA-binding pseudobarrel domain 11 95 IPR015300 -
Gabi2637g00064 299 CDD B3_DNA 1 86 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2637g00064 Gabi-Chr2637 527443 529361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2637g00064 11 299 B3 DNA Binding Superfamily AT3G18990 27.914 2.65e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi2637g00064 B3 1.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2637g00064 - - lja:Lj5g3v2241450.1 309.301