Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2637g00040 ATGATGGAAGCTTTTCATTTGTATGGTATGGGTGGTGGTGGTTCATCTGATGTGAGGCCTTTGGGGAAGAGGTCCGTGGAGTGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCATAGCTAAGCAGCTGAGTCCGGTGCCAGAACATAGGCAATTTTTACCTATGCCTGGCGCTGGGGGTTCTTCCAACTCCAATACTTCATCTTCGTGCTCTGATGAGGTAGATCTTGGGAACAAGGAAGGTGACAAGAAGAGGAGGGTTATTGTGCTGGAGGATGAATTGGATTTGAATGAGGTTGCAGAAGCGGGTAGCCTTAGCTTGAAGCTTGGTGGTGGACGTGGTAGTGGTGGTACTCCAATTCCTGTTCCAAGCTGGGAAGGAACCAACGGCAAGAAAGGCAGGGTTGCTGCTGGAGGTACTTCTAATCGAGCTGTTTGTCAGGTGGAGGACTGTGGCGTAGATCTCACCAACGCTAAAGATTATCACAGACGTCATAAAGTTTGTGAGATGCACTCCAAGGCCACTAAGGCCCTTGTGGGAAATGCAATGCAGCGCTTCTGCCAACAATGTAGTAGGTTTCACATGCTTCAGGAGTTCGATGAAGGAAAGAGAAGCTGTCGTAGACGATTGGCGGGCCATAATAAACGAAGGAGGAAAACAAATCACGATGCTGTTCCCAATGGAAGTTCACTGAACGATGATCAGACTAGCAGTTACCTGTTGATAAGTTTATTGAAGATACTTTCTAAAATGCATTATCAGGCCACAGATCAGGATCTGCTGACACATCTTTTAAGGAGTCTTGCTAGTCAGAATGGTGAGCAAGGGCGCATGAACTTGTCTAACCTTTTGCAGGAACCGGAGAATTTGTTGAAAGAAGGGAGTTCCTCTGGGAAGTCTGAGATGGTTTCTACTTTATTATCAAATGGTTCTCATGGCTCTCCAACTGTTACAAGACACCATCAAACAGTTTCTATTAGTGAAATTCAGCATCAGGTGATGCATGCACATGATGCTAGGGCTGCTGATCAACAAACCATGTCTTCTACAAAGCCCAGCATTTCAAATAGTCCTCCTGCTTACTCAGAAGCCAGAGACAGTACTGCTGGACAGACCAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGCATAGAGGACATAGAAAGGTTGCCTGTCTCTGAAAATGTTGTTACAAGCTCTCTTGTTTACCAGTGGATGCAACAAGATTCTCATCAGTCAAGTCCACCTCAAACGAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTCAAACTCTTTGGTAAAGAGCCGAATGATTTTCCTCATGTACTCAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCTACTGATATTGAGAGCTACATACGACCTGGTTGTATTGTTTTGACTATTTATCTGCGTCAGCCTGAGGCTTTGTGGGAGGAACTTTGCTATGATATGACTTCCAGTTTGAATAAGCTTTTGGATGTCTCGGATGATGCTTTTTGGAGTACTGGATGGATTCACATCAGGGTGCAGCATCAGATAGCCTTCATTTTCAATGGTCAGGTTGTCATAGATACATCCTTACCTTTCAGAAGTAATAATTACAGTAAGATTTTGAATGTTAGTCCAATTGCTGTACCAGCATCAAAGACAGTTCAATTTTCTGTTAAGGGTATCAACCTGATTCGCCCTGCCACTAGGTTATTGTGTGCTTTAGAAGGGAATTATCTGGTCTGTGAAGATGCTCATGAGTTGATGGATCGATGCTCCAAGGATATTGATGAGCTTCAGTGCATTCAGTTTTCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATAGAGATTGAGGACCAGGGTTTGAGCAGCAGCTTTTTTCCTTTCATAGTTGTGGAGGAGGATGTTTGCTCCGAAATCTGTGTACTTGAGCCTTTACTGGAATTAAGTGATACTGATCCAGATATTGAAGGGACTGGAAAAATTAAAGCCAAAAATCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGATGCCAATTGAAATCTAGTGCAGATCTGTTTCCATTAAAACGATTCAAGTGGCTCATGGAGTTCTCTGTGGACCATGATTGGTGTGCTGTAGTTAAAAAACTATTGAACCTCCTGCTTGATGGAACTGTGAATACAGGAGATTCCCTGTACCTTGCACTTTCAGAGCTGGGTCTCCTTCACAGAGCTGTAAGGAGAAATAGCAGGCAGTTGGTGGAGCTGCTTTTGAGATTTGTTCCCGAGAATATTTCTGATAAACTAGGACCTGAAGGTAAGGCATTGGTTGATGGAGAAAATCGGAGCTTCTTGTTTAGACCTGATGTTGTTGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCTGGGAAGGATGGTTCTGAGGATGTACTGGATGCTTTAACTAATGATCCTTGCATGGTGGGAATTGAAGCATGGAAGAGTGCTTTTGACAGTACGGGCTCCACACCTGAGGAGTATGCACGTTTACGTGGCCATTATGCTTACATTCACTTGGTGCAAAAGAAAATCAACAAGAGACAAGGAGCAGCTCAAGTGGTGATTGAGATTCCAAGTAATCTGACAGGGTTCAATACAAACCTGAAGCAAGATGAGTCCTCGACTAGCTTTGAGATTGGAAAGGCTGAAGTTAGAAGTGTTCAAAAGCACTGCAAACTTTGTGATCGTAAGTTGTCTTGTAGAACTGCTGTAGGCAGGTCTTTGGTCTACAGACCTACAATGTTGTCAATGGTGGCCATAGCAGCAGTATGTGTCTGTGTGGCTCTTCTGTTTAAAAGCTCACCCGAAGTTCTGTATGTATTCCGACCCTTCAGGTGGGAATCATTGGAGTTCGGAACATGCTGA 2979 0.4374 MMEAFHLYGMGGGGSSDVRPLGKRSVEWDLNDWKWDGDLFIAKQLSPVPEHRQFLPMPGAGGSSNSNTSSSCSDEVDLGNKEGDKKRRVIVLEDELDLNEVAEAGSLSLKLGGGRGSGGTPIPVPSWEGTNGKKGRVAAGGTSNRAVCQVEDCGVDLTNAKDYHRRHKVCEMHSKATKALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNHDAVPNGSSLNDDQTSSYLLISLLKILSKMHYQATDQDLLTHLLRSLASQNGEQGRMNLSNLLQEPENLLKEGSSSGKSEMVSTLLSNGSHGSPTVTRHHQTVSISEIQHQVMHAHDARAADQQTMSSTKPSISNSPPAYSEARDSTAGQTKMNNFDLNDIYIDSDDGIEDIERLPVSENVVTSSLVYQWMQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPHVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQPEALWEELCYDMTSSLNKLLDVSDDAFWSTGWIHIRVQHQIAFIFNGQVVIDTSLPFRSNNYSKILNVSPIAVPASKTVQFSVKGINLIRPATRLLCALEGNYLVCEDAHELMDRCSKDIDELQCIQFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICVLEPLLELSDTDPDIEGTGKIKAKNQAMDFIHEMGWLLHRCQLKSSADLFPLKRFKWLMEFSVDHDWCAVVKKLLNLLLDGTVNTGDSLYLALSELGLLHRAVRRNSRQLVELLLRFVPENISDKLGPEGKALVDGENRSFLFRPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKSAFDSTGSTPEEYARLRGHYAYIHLVQKKINKRQGAAQVVIEIPSNLTGFNTNLKQDESSTSFEIGKAEVRSVQKHCKLCDRKLSCRTAVGRSLVYRPTMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWESLEFGTC 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2637g00040 992 Gene3D - 708 884 IPR036770 -
Gabi2637g00040 992 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Gabi2637g00040 992 MobiDBLite consensus disorder prediction 52 80 - -
Gabi2637g00040 992 MobiDBLite consensus disorder prediction 294 375 - -
Gabi2637g00040 992 SUPERFAMILY SBT domain 146 227 IPR036893 GO:0003677|GO:0005634
Gabi2637g00040 992 MobiDBLite consensus disorder prediction 344 375 - -
Gabi2637g00040 992 Pfam SBP domain 148 221 IPR004333 GO:0003677
Gabi2637g00040 992 MobiDBLite consensus disorder prediction 59 76 - -
Gabi2637g00040 992 MobiDBLite consensus disorder prediction 415 447 - -
Gabi2637g00040 992 Gene3D - 138 209 IPR036893 GO:0003677|GO:0005634
Gabi2637g00040 992 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 56 815 IPR044817 GO:0003677
Gabi2637g00040 992 SUPERFAMILY Ankyrin repeat 760 878 IPR036770 -
Gabi2637g00040 992 MobiDBLite consensus disorder prediction 112 139 - -
Gabi2637g00040 992 MobiDBLite consensus disorder prediction 294 332 - -
Gabi2637g00040 992 MobiDBLite consensus disorder prediction 213 233 - -
Gabi2637g00040 992 FunFam Squamosa promoter-binding-like protein 14 139 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2637g00040 Gabi-Chr2637 368744 377415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2637g00040 22 991 SBP-box Gene Family AT3G60030 54.819 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi2637g00040 SBP 1.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2637g00040 - - gmx:100809806 1560.81