Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2637g00035 ATGCAGATCTTCGTGAAAACCCTAACAGGTAAGACGATAACCTTAGAGGTAGAATCGTCTGATACAGTCGATAATGTGAAGGCGAAGATACAAGACAAGGAAGGCATCCCTCCCGATCAACAGCGCCTCATATTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGCGGCGGTGGCAAGAAGCGCAAGAAGAAAAAGAAGACTTACACGGAGCCGAAGAAGACCAATTACAAGAGGAAGAGGCCCAAGTGTGCCCTGCTCCAGCTCTACAAGGTCGATGAATCAGGCAAGCTTCAGAAGCTGAGGAAGGAGTGCCCTAATCCTGAGTGTCCACCGGGTACCTTCATGGCCAATCACTCTGACAGGCACTACTGTGGCAAGTGTGGCCTCTCCTATCTTTATCAGACAGCCGTCCCTGACTCTAACCCTACTGCGTCGTCTTGA 498 0.5301 MQIFVKTLTGKTITLEVESSDTVDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGKKRKKKKKTYTEPKKTNYKRKRPKCALLQLYKVDESGKLQKLRKECPNPECPPGTFMANHSDRHYCGKCGLSYLYQTAVPDSNPTASS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2637g00035 165 SUPERFAMILY Zn-binding ribosomal proteins 103 154 IPR011332 GO:0006412
Gabi2637g00035 165 SUPERFAMILY Ubiquitin-like 1 77 IPR029071 -
Gabi2637g00035 165 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Gabi2637g00035 165 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Gabi2637g00035 165 Gene3D - 82 156 IPR038582 -
Gabi2637g00035 165 MobiDBLite consensus disorder prediction 75 95 - -
Gabi2637g00035 165 Gene3D - 1 81 - -
Gabi2637g00035 165 PANTHER UBIQUITIN 1 87 - -
Gabi2637g00035 165 SMART Ribosomal_S27_2 104 149 IPR002906 GO:0003735|GO:0005840|GO:0006412
Gabi2637g00035 165 FunFam Ubiquitin-40S ribosomal protein S27a 1 79 - -
Gabi2637g00035 165 PRINTS Ubiquitin signature 11 31 IPR019956 -
Gabi2637g00035 165 PRINTS Ubiquitin signature 53 74 IPR019956 -
Gabi2637g00035 165 PRINTS Ubiquitin signature 32 52 IPR019956 -
Gabi2637g00035 165 SMART ubq_7 1 72 IPR000626 GO:0005515
Gabi2637g00035 165 Pfam Ribosomal protein S27a 105 148 IPR002906 GO:0003735|GO:0005840|GO:0006412
Gabi2637g00035 165 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Gabi2637g00035 165 CDD Ubl_ubiquitin 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2637g00035 Gabi-Chr2637 327693 328403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2637g00035 1 155 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 78.710 9.03e-80 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2637g00035 K02977 - pop:7455401 243.817