Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2637g00020 ATGGATGTAAAGGTAAAGAAAGGACGGTCTATACAGCAGGGTGAAGACGAGATGGGCCTGAGGAAAGGTCCATGGAGCGCTGAAGAAGACACCATTCTCGTAAATCACGTCACCACCCACGGTGATCGTCGCTGGAATTCCGTCGCTCGCTGTACAGGCCTGAAGAGAACGGGGAAAAGTTGCAGGTTAAGATGGCTAAACTACTTGCGTCCTGATGTTCGGCGTGGGAACATCACACTCCAAGAACAGATAATGATTCTAGACCTCCATTCTCGGTGGGGCAATAGGTGGTCCAAAATTGCTCAGCACTTGCCTGGGAGAACAGATAACGAAATCAAGAATTATTGGAGGACTAGAGTCATTAAGCAAGCAAAGCAACTCAAGTGTGACGTCAACAGCAAAGAGTTCAAAGATGCCTTGCGTTATGTATGGATGCCCCGTTTGATCGAGCGGATTCATCCACCATCCGAAACTTACTGCCCGACCCGTATCTCCCCCTCGCAACTGGGCCCAAACCCAAGTGCATGTGCTGATGGAGTCCCTGTCCATCACCAACACGGGTTACACGGTTCAGGTTCAGGTTCTGGTTCTGGAACAGAGTGGCTAAATGATATTTACTTGGACTCTTCAGGCGTGGAGTTACAGAGTGTGTCTTCTGAACAATTGGGTCATAATAGTAATAATAATGTTTCGGGTCTATGCCCAGGTTTCAATAACCAAATGTTTGAACAGGGGAATGGTGGTGACGGGGACTTACTGGAGATTTTGTGGAACGATGAGAATATATGGCTTATGCGAGAACTTTGTGATGAACACGAAATTATAAAAGACAGTTTCCTTGCGTGA 846 0.4716 MDVKVKKGRSIQQGEDEMGLRKGPWSAEEDTILVNHVTTHGDRRWNSVARCTGLKRTGKSCRLRWLNYLRPDVRRGNITLQEQIMILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKEFKDALRYVWMPRLIERIHPPSETYCPTRISPSQLGPNPSACADGVPVHHQHGLHGSGSGSGSGTEWLNDIYLDSSGVELQSVSSEQLGHNSNNNVSGLCPGFNNQMFEQGNGGDGDLLEILWNDENIWLMRELCDEHEIIKDSFLA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2637g00020 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 73 IPR017930 -
Gabi2637g00020 281 MobiDBLite consensus disorder prediction 1 22 - -
Gabi2637g00020 281 CDD SANT 24 69 IPR001005 -
Gabi2637g00020 281 SMART sant 21 71 IPR001005 -
Gabi2637g00020 281 SMART sant 74 122 IPR001005 -
Gabi2637g00020 281 FunFam MYB transcription factor 79 142 - -
Gabi2637g00020 281 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Gabi2637g00020 281 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Gabi2637g00020 281 Gene3D - 79 120 - -
Gabi2637g00020 281 Gene3D - 22 74 - -
Gabi2637g00020 281 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Gabi2637g00020 281 FunFam Myb transcription factor 22 74 - -
Gabi2637g00020 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Gabi2637g00020 281 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 157 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gabi2637g00020 281 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Gabi2637g00020 281 CDD SANT 79 118 IPR001005 -
Gabi2637g00020 281 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2637g00020 Gabi-Chr2637 221958 223114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2637g00020 15 205 MYB Transcription Factor Family AT2G47190 61.576 1.22e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2637g00020 Myb_DNA-binding 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2637g00020 K09422 - gmx:100797220 332.028