Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2637g00019 ATGGAGACGGAGTATGTCCACATGATGAGAAGTTTATCAGGAGCATATCGAAGTGAAGAAGAGATGTTAATAACCAAAGGTCCATGGACAGAGGAAGAGGATTCTGTTCTCTTCAACTACATCACTGTCCACGGCGAAGGACAATGGAATTCTGTCGCTCGTTCTGCAGGTCTAAAACGAACAGGCAAAAGCTGCAGATTAAGATGGTTGAACTATTTGCATCCAAGTGTTCGACGTGGGAATATAACCCTCCAAGAACAGCTCTTGATTCTTGACCTCCATTCCCGCTGGGGCAATAGGTGGTCAAAAATAGCTGAGCAGTTACCGGGCAGAACAGACAACGAGATAAAAAATTATTGGAGAACCAGAGTGGTGAAACAGGCTAACCGACTCAAATGTGATATCAACAGCAAACAATTCAGAGACACGTTACGTTTTGTATGGATGCCACGCATGCAGGAGCGGATCCAGGCTCAGGCCTCATCCGTGAGTACTGGATCCAACACTGAAGCACACAGCGACCCTTTTGAAGAAAACCCCTGTTTGTTGTCAGAGGTTGATGTTCATGTCCCTTCTCTCTCTGATTCTAGCGTATGCGTATCTAGATACAGTGCAGAGAAAGGTTACAATCCATGGCAGATGAGAAACTACTCGGATATACCAGGCTATGGTTTCGGTGGTGTGGACTTGTGGACGGATGAAAATATATGCTTCTTGCAACAGCAGCTAGCTGATGATTAA 741 0.4534 METEYVHMMRSLSGAYRSEEEMLITKGPWTEEEDSVLFNYITVHGEGQWNSVARSAGLKRTGKSCRLRWLNYLHPSVRRGNITLQEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQANRLKCDINSKQFRDTLRFVWMPRMQERIQAQASSVSTGSNTEAHSDPFEENPCLLSEVDVHVPSLSDSSVCVSRYSAEKGYNPWQMRNYSDIPGYGFGGVDLWTDENICFLQQQLADD 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2637g00019 246 CDD SANT 83 122 IPR001005 -
Gabi2637g00019 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 128 IPR017930 -
Gabi2637g00019 246 CDD SANT 28 73 IPR001005 -
Gabi2637g00019 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 77 IPR017930 -
Gabi2637g00019 246 ProSiteProfiles Myb-like domain profile. 26 73 IPR001005 -
Gabi2637g00019 246 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Gabi2637g00019 246 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Gabi2637g00019 246 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 185 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gabi2637g00019 246 Gene3D - 25 78 - -
Gabi2637g00019 246 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Gabi2637g00019 246 SMART sant 25 75 IPR001005 -
Gabi2637g00019 246 SMART sant 78 126 IPR001005 -
Gabi2637g00019 246 FunFam Myb transcription factor 26 78 - -
Gabi2637g00019 246 FunFam MYB transcription factor 83 146 - -
Gabi2637g00019 246 Gene3D - 83 124 - -
Gabi2637g00019 246 SUPERFAMILY Homeodomain-like 25 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2637g00019 Gabi-Chr2637 215293 216242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2637g00019 19 246 MYB Transcription Factor Family AT2G47190 49.407 3.89e-78 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2637g00019 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2637g00019 K09422 - gmx:100819467 356.295