Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2637g00008 ATGCCCATCGTCGATTCTGGATGTGCTCCAGACCATTCCATGCATCGTCTTGCTCGCAAACGACCTTGGAATCACTCAAACCAAGGAACTTCTTCAGATCAAGTTGATGAGGGGAGTCATGTAAAAGTTTATGTTGCACCAGTTCCAAGAACAGCAACAGAGGCTGATGTACGCCTTGTGTTTGAAGGACATGGAACTATTGTTGAGGTTGTTCTTCTAAAGGATAAAAGAACTGGTGCACGACAAGGAAGTTGTTTTGTGAAATATGCAACATTAAATGAAGCTGACAGCGCTATTAAGGCTTTAAGCAATCAGTACACATTTCCTGGGGAATTAGCACCTGTTGTTGTCAGATATGCTGATCGAGAACGTGAACGTCTTGGGGTTCGAGGGTTCTGCCGAAACTTGGAAAAGAAAGATCCTTTACAAGAGGTGGTGGATAAAGTTTTTGTTGGTTACATCAACAAAGAAGCTTCGAAAAAGGAAATGGAAGAAATATTTTCACCTTATGGGCATGTAGAAGATATCTTCATTGCGCTCGGTCGTGGATATGGTTTTGTCAAATTTTCTAATAGAGACATGGCATTGGCTGCAATCAAAGGGCTGAATGGAGCGTACACGATGAGAGGTTGTGGTCATCCTTTAATTGTTCGTTTTGCGGACCCTAAGAAACCTAAGACTGGAGAATCAAGGCCACTGCAAAATTTTGGTGATTCCAATTCTGGAGGGAGTTTTATGCCTATTGCCCCACATCATTCAACGATTCCACGCCCACAAGTTGCTTCTCATATGCAAAACTGGGAACCTGGTGCTACTATGGTACAGCAGCCATTTCATCCCCAACAAGGACATTCACAATTGGCTTCAATGCCTTTGCGGTCAGTTCAAGCTCCAAAGTTGTCTTCTCAACCATTTAATACTGAGGTGCAGAGACAATCGCATCCAGCAGATTTATCAGTTCAAAATATTGAGCAGCAGCTAAGTTCACAGCTGCCTACTCAGACTGGAAGCAATCCTAGAACAGTAGCTGGAAGCACCTCACCTGATATGCCTAGAAGTCCCCTAGATGAAGATTATCCGGAATGTGATTGGAGTGAACACTTCTGCCCTGACGGTCATAAGTACTACTACAACTGTGTCACTTGCGAAAGCAGATGGGACAAGCCTGAGGGGTATGCCTTGTATGAAAAAGAAACACAGAAGCAGCAGGAGCAGGAGGATCATAGCTGTCTTCACTCGCAAGTGTTGTTATCTTCCTGTCAACAAGTTGCTCAAAGACAGCAGGAAACAAATCATGATCACAGGCAGTCAGAAACAAGTCCTTTTGTTGGACAGGTGTGA 1341 0.4385 MPIVDSGCAPDHSMHRLARKRPWNHSNQGTSSDQVDEGSHVKVYVAPVPRTATEADVRLVFEGHGTIVEVVLLKDKRTGARQGSCFVKYATLNEADSAIKALSNQYTFPGELAPVVVRYADRERERLGVRGFCRNLEKKDPLQEVVDKVFVGYINKEASKKEMEEIFSPYGHVEDIFIALGRGYGFVKFSNRDMALAAIKGLNGAYTMRGCGHPLIVRFADPKKPKTGESRPLQNFGDSNSGGSFMPIAPHHSTIPRPQVASHMQNWEPGATMVQQPFHPQQGHSQLASMPLRSVQAPKLSSQPFNTEVQRQSHPADLSVQNIEQQLSSQLPTQTGSNPRTVAGSTSPDMPRSPLDEDYPECDWSEHFCPDGHKYYYNCVTCESRWDKPEGYALYEKETQKQQEQEDHSCLHSQVLLSSCQQVAQRQQETNHDHRQSETSPFVGQV 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2637g00008 446 Gene3D - 143 229 IPR012677 -
Gabi2637g00008 446 MobiDBLite consensus disorder prediction 296 316 - -
Gabi2637g00008 446 SMART rrm1_1 42 118 IPR000504 GO:0003723
Gabi2637g00008 446 SMART rrm1_1 148 218 IPR000504 GO:0003723
Gabi2637g00008 446 Gene3D - 27 128 IPR012677 -
Gabi2637g00008 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 122 IPR000504 GO:0003723
Gabi2637g00008 446 ProSitePatterns WW/rsp5/WWP domain signature. 364 389 IPR001202 GO:0005515
Gabi2637g00008 446 PANTHER RNA BINDING PROTEIN 26 396 - -
Gabi2637g00008 446 MobiDBLite consensus disorder prediction 222 256 - -
Gabi2637g00008 446 Pfam WW domain 362 389 IPR001202 GO:0005515
Gabi2637g00008 446 SUPERFAMILY RNA-binding domain, RBD 148 245 IPR035979 GO:0003676
Gabi2637g00008 446 Gene3D - 360 407 - -
Gabi2637g00008 446 MobiDBLite consensus disorder prediction 329 358 - -
Gabi2637g00008 446 CDD WW 362 391 IPR001202 GO:0005515
Gabi2637g00008 446 MobiDBLite consensus disorder prediction 329 348 - -
Gabi2637g00008 446 ProSiteProfiles WW/rsp5/WWP domain profile. 364 391 IPR001202 GO:0005515
Gabi2637g00008 446 MobiDBLite consensus disorder prediction 425 446 - -
Gabi2637g00008 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 109 IPR000504 GO:0003723
Gabi2637g00008 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 208 IPR000504 GO:0003723
Gabi2637g00008 446 SUPERFAMILY RNA-binding domain, RBD 23 130 IPR035979 GO:0003676
Gabi2637g00008 446 SMART ww_5 359 391 IPR001202 GO:0005515
Gabi2637g00008 446 SUPERFAMILY WW domain 363 395 IPR036020 GO:0005515
Gabi2637g00008 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 222 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2637g00008 Gabi-Chr2637 109705 125944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2637g00008 39 316 Eukaryotic Initiation Factors Gene Family AT1G71770 26.821 1.72e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2637g00008 K13207 - gmx:100776162 665.225