Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2637g00007 ATGCCCATCGTCGATTCTGGATGTGCTCCAGACCATTCCATGCATCGTCTTGCTCGCAAACGACCTTGGAATCACTCAAACCAAGGAACTTCTTCAGATCAAGTTGATGAGGGGAGTCATGTAAAAGTTTATGTTGCACCAGTTCCAAGAACAGCAACAGAGGCTGATGTACGCCTTGTGTTTGAAGGACATGGAACTATTGTTGAGGTTGTTCTTCTAAAGGATAAAAGAACTGGTGCACGACAAGGAAGTTGTTTTGTGAAATATGCAACATTAAATGAAGCTGACAGCGCTATTAAGGCTTTAAGCAATCAGTACACATTTCCTGGGGAATTAGCACCTGTTGTTGTCAGATATGCTGATCGAGAACGTGAACGTCTTGGGGTTCGAGGGTTCTGCCGAAACTTGGAAAAGAAAGATCCTTTACAAGAGGTGGTGGATAAAGTTTTTGTTGGTTACATCAACAAAGAAGCTTCGAAAAAGGAAATGGAAGAAATATTTTCACCTTATGGGCATGTAGAAGATATCTTCATTGCGCTCGGTCGTGGATATGGTTTTGTCAAATTTTCTAATAGAGACATGGCATTGGCTGCAATCAAAGGGCTGAATGGAGCGTACACGATGAGAGGTTGTGGTCATCCTTTAATTGTTCGTTTTGCGGACCCTAAGAAACCTAAGACTGGAGAATCAAGGCCACTGCAAAATTTTGGTGATTCCAATTCTGGAGGGAGTTTTATGCCTATTGCCCCACATCATTCAACGATTCCACGCCCACAAGTTGCTTCTCATATGCAAAACTGGGAACCTGGTGCTACTATGGTACAGCAGCCATTTCATCCCCAACAAGGACATTCACAATTGGCTTCAATGCCTTTGCGGTCAGTTCAAGCTCCAAAGTTGTCTTCTCAACCATTTAATACTGAGGTGCAGAGACAATCGCATCCAGCAGATTTATCAGTTCAAAATATTGAGCAGCAGCTAAGTTCACAGACTGGAAGCAATCCTAGAACAGTAGCTGGAAGCACCTCACCTGATATGCCTAGAAGTCCCCTAGATGAAGATTATCCGGAATGTGATTGGAGTGAACACTTCTGCCCTGACGGTCATAAGTACTACTACAACTGTGTCACTTGCGAAAGCAGATGGGACAAGCCTGAGGGGTATGCCTTGTATGAAAAAGAAACACAGAAGCAGCAGGAGCAGGAGGATCATAGCTGTCTTCACTCGCAAGTGTTGTTATCTTCCTGTCAACAAGTTGCTCAAAGACAGCAGGAAACAAATCATGATCACAGGCAGTCAGAAACAAGTCCTTTTGTTGGACAGGTGTGA 1329 0.4372 MPIVDSGCAPDHSMHRLARKRPWNHSNQGTSSDQVDEGSHVKVYVAPVPRTATEADVRLVFEGHGTIVEVVLLKDKRTGARQGSCFVKYATLNEADSAIKALSNQYTFPGELAPVVVRYADRERERLGVRGFCRNLEKKDPLQEVVDKVFVGYINKEASKKEMEEIFSPYGHVEDIFIALGRGYGFVKFSNRDMALAAIKGLNGAYTMRGCGHPLIVRFADPKKPKTGESRPLQNFGDSNSGGSFMPIAPHHSTIPRPQVASHMQNWEPGATMVQQPFHPQQGHSQLASMPLRSVQAPKLSSQPFNTEVQRQSHPADLSVQNIEQQLSSQTGSNPRTVAGSTSPDMPRSPLDEDYPECDWSEHFCPDGHKYYYNCVTCESRWDKPEGYALYEKETQKQQEQEDHSCLHSQVLLSSCQQVAQRQQETNHDHRQSETSPFVGQV 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2637g00007 442 SMART rrm1_1 42 118 IPR000504 GO:0003723
Gabi2637g00007 442 SMART rrm1_1 148 218 IPR000504 GO:0003723
Gabi2637g00007 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 122 IPR000504 GO:0003723
Gabi2637g00007 442 MobiDBLite consensus disorder prediction 222 256 - -
Gabi2637g00007 442 Pfam WW domain 358 385 IPR001202 GO:0005515
Gabi2637g00007 442 SUPERFAMILY RNA-binding domain, RBD 148 245 IPR035979 GO:0003676
Gabi2637g00007 442 MobiDBLite consensus disorder prediction 296 344 - -
Gabi2637g00007 442 CDD WW 358 387 IPR001202 GO:0005515
Gabi2637g00007 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 109 IPR000504 GO:0003723
Gabi2637g00007 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 208 IPR000504 GO:0003723
Gabi2637g00007 442 MobiDBLite consensus disorder prediction 421 442 - -
Gabi2637g00007 442 ProSitePatterns WW/rsp5/WWP domain signature. 360 385 IPR001202 GO:0005515
Gabi2637g00007 442 Gene3D - 27 128 IPR012677 -
Gabi2637g00007 442 SUPERFAMILY RNA-binding domain, RBD 23 130 IPR035979 GO:0003676
Gabi2637g00007 442 Gene3D - 143 229 IPR012677 -
Gabi2637g00007 442 PANTHER RNA BINDING PROTEIN 26 396 - -
Gabi2637g00007 442 Gene3D - 356 403 - -
Gabi2637g00007 442 MobiDBLite consensus disorder prediction 296 353 - -
Gabi2637g00007 442 ProSiteProfiles WW/rsp5/WWP domain profile. 360 387 IPR001202 GO:0005515
Gabi2637g00007 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 222 IPR000504 GO:0003723
Gabi2637g00007 442 SMART ww_5 355 387 IPR001202 GO:0005515
Gabi2637g00007 442 SUPERFAMILY WW domain 359 391 IPR036020 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2637g00007 Gabi-Chr2637 109705 125944 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2637g00007 39 316 Eukaryotic Initiation Factors Gene Family AT1G71770 26.821 1.72e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2637g00007 K13207 - gmx:100776162 652.899