Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2637g00002 ATGTCGAAGAGGAAGTTCGGATTCGAAGGGTTTGGCATAAACCGCCAATCAACCTATAGCTTCGAGCGATCTCAAGCTCCTCAGCGACTCTACGTTCCTCCCTCGTCGCGGCACGGCCATGACAATTACGAAGATACTGACCTCGACAACATCGATTACGACGACAACGATGGTCCCAGGGAGGAAGAGAACAACGACAATGGCGGCGACAAGAAGGACGGTAACGACGACGAAGAAATCGATCCCCTGGATGCGTTCATGGAAGGGATTCACGAGGAGATGAAGGCGCCGCCGCCTCCGAAGCCGAAGGAGAAGGCCGAGGACAAGTACAGAGATGACGAGGAGGACGATCCGATGGAGAGCTTTCTGAGGGCGAAAAAGGACCTAGGGTTGACGCTGGCTTCGGAGGCGCTGCATGCTGGGTATGATTCTGACGAGGAGGTTTATGCTGCTGCCAAGGCTGTGGACGCTGGTTTAATAGAGTATGATTCTGATGATAACCCTATTGTTATTGACAAGAGGAAAATTGAGCCCATACTTCCTTTGGATCACAGTTCCATTGATTATGAACCCTTTAATAAGGATTTTTATGAGGAGACCCCTTCAACATCAGGTATGAGTGAGCAAGATGTAACTGAATACCGGAATAGTTTGGCTATTCGTGTATCGGGTTTTGATGTTCCTAAGCCAATAAAGACATTTGAGGATTGTGGGTTCTCTCCACAAATTATGAATGCTATAAAAAAACAAGGTTATGAGAAGCCCACGTCTATACAATGCCAAGCTTTACCGGTTGTGCTTTCTGGTAGAGATATCATTGGTATAGCAAAAACTGGTTCCGGTAAAACTGCTGCTTTTGTGCTTCCAATGATCGTGCATATCATGGATCAGCCTGAACTCCAGAAGGAGGAGGGTCCTATAGGAGTGATATGTGCACCTACTAGAGAATTAGCACATCAGATATATCTGGAGTCCAAGAAATTTGCAAAATCGTATGGTATTCGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGATCAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCTACCCCCGGCAGATTGATAGACATGCTAAAAATGAAGGCTTTGACAATGATGAGAGCAACTTACCTGGTTCTTGATGAGGCTGACCGGATGTTTGATCTTGGATTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATTAGGCCAGACCGCCAAACTTTACTCTTCTCTGCAACAATGCCTCGGAAAGTTGAAAAGTTGGCCAGGGAAATCCTTACTGATCCTATTAGAGTAACAGTTGGGGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCACGTAATTCCTTCTGATTCTGAGAAATTGCCGTGGCTTCTGGAGAAGCTGCCTGAAATGATTGATCAAGGTGATGCCCTCGTATTTGCTTCCAAGAAGGCCACTGTGGATGAAATTGATTCGCAATTGGCTCAGAGAGGCTTTAAAGTTGCTGCCTTGCATGGCGATAAAGATCAAGCTTCCCGTATGGATATTTTGCAGAAGTTTAAATCTGGCATCTACCATGTGCTTATTGCCACTGATGTTGCTGCTCGAGGTCTTGACATCAAGTCAATCAAGTCAGTGGTGAATTTCGATATTGCAAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGCCGTGCTGGTGACAAGGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGATTTGCTGGTGAATTGGTTAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCCATAGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAAGAAAAGGAGGTGGTAGAAAAGGCAGAGCTAGAGGAGGAGGTGGCAGCGGCGGCGGCGGAGGTGGCCGAGGTGTGCGTGGAGTAGATTTTGGCTTGGGCATTGGATATAATCCAGAGTCAAATAACGCTTCATCTAACCAAGTTTCAAGTCGATCTTCCACTGCAAATTCTCTACGAACAGGAATGATGTCACAATTTAAGAGCAACTTCGTTGCTGCTTCATCAAACTCTCAGAATCAAGGATTCAGTAACAATACGAGCATGGCTGCCAATAAGAGACCAGCACTCCCTGGCTTTGTATCTGGTGGATCAATTGGTGGGGATATAAATACTCACCAATATACTGCTTCATCCAATCCTGCTACATCAGCAGTAAATTCCACAAGCCAAAGTTCTGGAGGAAATCCTGGTCAGAAGAGCACAAACAGTTCTAAACCGAAAGAAAGACGAAGGCCATCAGGTTGGGATAGATAG 2346 0.4569 MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIDYDDNDGPREEENNDNGGDKKDGNDDEEIDPLDAFMEGIHEEMKAPPPPKPKEKAEDKYRDDEEDDPMESFLRAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGLIEYDSDDNPIVIDKRKIEPILPLDHSSIDYEPFNKDFYEETPSTSGMSEQDVTEYRNSLAIRVSGFDVPKPIKTFEDCGFSPQIMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLESKKFAKSYGIRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVHVIPSDSEKLPWLLEKLPEMIDQGDALVFASKKATVDEIDSQLAQRGFKVAALHGDKDQASRMDILQKFKSGIYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSIELMDLAMKDGRFRSKRDARKGGGRKGRARGGGGSGGGGGGRGVRGVDFGLGIGYNPESNNASSNQVSSRSSTANSLRTGMMSQFKSNFVAASSNSQNQGFSNNTSMAANKRPALPGFVSGGSIGGDINTHQYTASSNPATSAVNSTSQSSGGNPGQKSTNSSKPKERRRPSGWDR 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2637g00002 781 MobiDBLite consensus disorder prediction 1 118 - -
Gabi2637g00002 781 CDD DEADc_DDX42 243 439 - -
Gabi2637g00002 781 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 232 260 IPR014014 GO:0003724
Gabi2637g00002 781 Gene3D - 195 439 IPR027417 -
Gabi2637g00002 781 Pfam DEAD/DEAH box helicase 256 427 IPR011545 GO:0003676|GO:0005524
Gabi2637g00002 781 SMART helicmild6 491 572 IPR001650 -
Gabi2637g00002 781 Pfam Helicase conserved C-terminal domain 468 572 IPR001650 -
Gabi2637g00002 781 MobiDBLite consensus disorder prediction 619 648 - -
Gabi2637g00002 781 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 263 438 IPR014001 -
Gabi2637g00002 781 MobiDBLite consensus disorder prediction 767 781 - -
Gabi2637g00002 781 MobiDBLite consensus disorder prediction 699 715 - -
Gabi2637g00002 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 605 IPR027417 -
Gabi2637g00002 781 FunFam probable ATP-dependent RNA helicase DDX17 194 441 - -
Gabi2637g00002 781 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 612 IPR001650 -
Gabi2637g00002 781 MobiDBLite consensus disorder prediction 62 118 - -
Gabi2637g00002 781 SMART ultradead3 251 453 IPR014001 -
Gabi2637g00002 781 MobiDBLite consensus disorder prediction 730 766 - -
Gabi2637g00002 781 Gene3D - 440 616 IPR027417 -
Gabi2637g00002 781 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 195 612 - -
Gabi2637g00002 781 MobiDBLite consensus disorder prediction 13 31 - -
Gabi2637g00002 781 CDD SF2_C_DEAD 450 582 - -
Gabi2637g00002 781 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 384 392 IPR000629 -
Gabi2637g00002 781 MobiDBLite consensus disorder prediction 47 61 - -
Gabi2637g00002 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 441 IPR027417 -
Gabi2637g00002 781 MobiDBLite consensus disorder prediction 699 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2637g00002 Gabi-Chr2637 22763 27121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2637g00002 229 582 Eukaryotic Initiation Factors Gene Family AT3G19760 32.773 3.29e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2637g00002 K12835 - gmx:100814854 1288.86