Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2635g00001 ATGGCTTCAAGTTCAAGTTCAAGTTCAAACCAAGGTGGCAGTGCAAAATCTTCATACAGAGGTGTCCGAAAGAGGAAATGGGGAAAATGGGTGTCGGAAATTCGCGAGCCAGGTACCAAAACCAGAATCTGGTTAGGGAGTTTCGAGACACCGGAGATGGCAGCAGCTGCATACGACGTCGCAGCGTTACATTTCAGGGGACGCGAAGCCAGACTCAACTTCCCTGAACTTGCTAGCACACTTCCTCGCCCCATGAGCAACAATGCTGACCACATACGCATGGCTGCACATGAAGCTGCCTTAAGGCTGAGGACCAACACGGTGGCGGCGCCGCAGCCGGAGGAACACAGTGGTTCGAGCACGGTGACGATGCCGCCGGTGACCGTGAGACTCTCCCCAACTCAGATTCAGGCAATCAATGAGTCACCTCTGGACTCACCTAAGATGTGGATGCAAATGACGTCAGACACTTTCACGTTGGAAGATCAATCCATGATGTTTACAAATAGCTATGAGTTTGATCCGGACAACGACTGGGAGGAGGGTGTGCATGACGGTTCTCTTTGGGATCCTTAG 576 0.5208 MASSSSSSSNQGGSAKSSYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGREARLNFPELASTLPRPMSNNADHIRMAAHEAALRLRTNTVAAPQPEEHSGSSTVTMPPVTVRLSPTQIQAINESPLDSPKMWMQMTSDTFTLEDQSMMFTNSYEFDPDNDWEEGVHDGSLWDP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2635g00001 191 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Gabi2635g00001 191 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Gabi2635g00001 191 MobiDBLite consensus disorder prediction 172 191 - -
Gabi2635g00001 191 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Gabi2635g00001 191 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Gabi2635g00001 191 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Gabi2635g00001 191 MobiDBLite consensus disorder prediction 1 17 - -
Gabi2635g00001 191 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Gabi2635g00001 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 153 - -
Gabi2635g00001 191 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Gabi2635g00001 191 MobiDBLite consensus disorder prediction 1 25 - -
Gabi2635g00001 191 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Gabi2635g00001 191 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2635g00001 Gabi-Chr2635 29790 30365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2635g00001 2 191 AP2-EREBP Transcription Factor Family AT1G71450 58.421 2.27e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2635g00001 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2635g00001 - - aprc:113869810 276.559