Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2624g00005 ATGGCGCCGAAGAAGCCGAGAAACTCAAGGGTGACGAGGAACCCTGATCTAATAAGGGGAATTGGCAAGTACTCGAGGTCCCAGATGTACCACAAGAGGGGCATCTGGGCCATTAAGGCCAAAAACGGCGGCGTTTTCCCTCGTCACGATCCTAATCCCAAGCCCGAAGCTACGGCTGAGAAGCCACCGAAGTTTTACCCCGCCGACGATGTGAAGAAGCCACTCGTCAACAAGCGGAAGCCAAAACCCACAAAACTCCGGGCTAGCATTACTCCAGGGACAGTGCTGATTCTGCTTGCAGGGAGGTTTAAAGGAAAGAGGGTTGTTTTCCTGAAGCAGCTTCCATCCGGGTTGCTTCTTGTCACAGGTCCCTTTAAGATCAATGGGGTTCCACTGAGAAGGGTGAACCAATCGTATGTCATTGGTACATCTACCAAGGTGGATATCTCTGGTTTTAATGTTGATAAATTCGATGACAAGTACTTTGCTAAGGAAGCAGAGAAAAAGAAAAAGAAGGGAGAAGGGGAGTTCTTTGAGGCAGAAAAGGAGGAGAAAAATGTGCTTCCCCAAGAAAAAAAAGATGACCAAAAAACTGTGGACACTGCTTTGTTAAAAGCCATTGAGAGTGTTCCGGACATGAGGTCTTACTTGGGTGCCAGGTTTTCGTTGAAGGCAGGAATGAAGCCTCATGAGCTAGTCTTCTAG 705 0.4809 MAPKKPRNSRVTRNPDLIRGIGKYSRSQMYHKRGIWAIKAKNGGVFPRHDPNPKPEATAEKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGFNVDKFDDKYFAKEAEKKKKKGEGEFFEAEKEEKNVLPQEKKDDQKTVDTALLKAIESVPDMRSYLGARFSLKAGMKPHELVF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2624g00005 234 Gene3D - 88 172 IPR014722 -
Gabi2624g00005 234 PANTHER 60S RIBOSOMAL PROTEIN L6 5 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Gabi2624g00005 234 SUPERFAMILY Translation proteins SH3-like domain 88 177 IPR008991 -
Gabi2624g00005 234 MobiDBLite consensus disorder prediction 53 77 - -
Gabi2624g00005 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Gabi2624g00005 234 Coils Coil 163 183 - -
Gabi2624g00005 234 CDD KOW_RPL6 82 234 IPR041997 -
Gabi2624g00005 234 Pfam Ribosomal protein L6, N-terminal domain 3 62 IPR005568 GO:0003735|GO:0005840|GO:0006412
Gabi2624g00005 234 MobiDBLite consensus disorder prediction 41 85 - -
Gabi2624g00005 234 FunFam 60S ribosomal protein L6 88 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2624g00005 Gabi-Chr2624 90487 92641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2624g00005 3 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 81.897 5.85e-124 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2624g00005 K02934 - gmx:100784101 400.979