Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2615g00007 ATGAGCCAACGCGTCCCTTCGTCTCGAACGGTTCGGCTCGGCCATGTCCAGCCCCAGGCCCCTGGTTACCGCACTATCTTCGGCAACGATCGCCTCGCTAATCTTCCCGTCCGATTCAAGGGGAATTCAATATCGACTACGAAGTTCAACTTTTTCACTTTTTTGCCAAAGGGATTGTTTGAACAGTTCAGGCGGGTTGCTAATCTCTACTTTCTTACAATCTCAATTTTGTCTACCACACCAATCAGCCCCGTGTCTCCAATAACTAATGTTATTCCTCTATCTCTGGTGCTTCTCCTCTCTCTAATTAAGGAAGCTTTTGAGGACTGGAAGCGTTTTCAAAATGACATGGCCATAAACAATAATATGATAGATATTTTGCAAGATCAAAAGTGGGTGTCTATACCCTGGAAAAAGTTGCAAGTTGGTGACATTGTCAAGGTTAGGCAGGATGGATTCTTTCCTGCAGATCTGCTTTTCCTGGCTAGTACAAATGTAGATGGTGTCTGCTACATTGAGACAGCTAATTTGGACGGGGAAACTAATTTGAAGATTAGGAAAGCTTTGGAAAAGACTTGGGATTACCTGACTCCAGAGAAGGCATCTGAGTTTAAAGGTGAAATTCAGTGTGAACAACCGAACAATTCATTGTATACCTTCACTGGAAATCTTATATTTCAAAACCAAACACTTCCTCTCAGTCCAAATCAACTTTTGTTGAGAGGATGCAGTCTCAGGAATACAGAGTATATTGTTGGGGTTGTTATTTTTACAGGACATGAAACAAAGGTGATGATGAATTCTATGAACGTTCCTTCCAAAAGAAGTACATTGGAGAGGAAGCTTGACAAACTTATACTCACTCTATTTGCGACTCTATTTGTGATGTGTTTTATTGGAGCTGTAGGCAGTGCTATTTTTGTAAACAAGAAGTATTTCTATTTACATCTTGAATCATCAGAGGAGGGCTCAGCACAGTTCGACCCAAGAAACAGATTTTTGGTTTTCCTTCTAACTATGTTTACCCTCATCACTTTGTACTCAACAATCATCCCCATTTCACTTTATGTGTCGATAGAGATGGTCAAATTTATTCAGTGCACTCAATTTATCAACAAGGATTTGCATATGTACCATCATGAAACCAATACCCCAGCATTGGCCAGAACTTCAAATCTGAATGAAGAACTTGGGCAGGTGGAATATATCTTCTCTGACAAAACTGGGACTCTGACAAGAAACTTAATGGAGTTCTTTAAGTGTTCAATTGGAGGAGAGGTCTACGGAAATGGTGTGACTGAAATTGAGAAGGGAATAGCAGAGCGTAATGGCATAAAACTTGAGGAAAATATCTCACCCAATGCAGTGCGAGAGAGGGGTTTCAATTTTGATGATGCTAGGCTTATGAGAGGAGCTTGGAGGAATGAGCCAAATCCTGATAGCTGCAAGGAATTCTTCAGATGCCTTGCTATATGCCATACTGTGCTTCCCGAGGGCGATGAGGCCCCTGAGAAGATCAGATATCAAGCTGCATCACCTGACGAGGCTGCTTTGGTTATTGCTGCGAAGCACTTTGGTTTTTTCTTTTACAGGGAATTTGAGTGCTACTCCTTCAAATGA 1620 0.4154 MSQRVPSSRTVRLGHVQPQAPGYRTIFGNDRLANLPVRFKGNSISTTKFNFFTFLPKGLFEQFRRVANLYFLTISILSTTPISPVSPITNVIPLSLVLLLSLIKEAFEDWKRFQNDMAINNNMIDILQDQKWVSIPWKKLQVGDIVKVRQDGFFPADLLFLASTNVDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEIQCEQPNNSLYTFTGNLIFQNQTLPLSPNQLLLRGCSLRNTEYIVGVVIFTGHETKVMMNSMNVPSKRSTLERKLDKLILTLFATLFVMCFIGAVGSAIFVNKKYFYLHLESSEEGSAQFDPRNRFLVFLLTMFTLITLYSTIIPISLYVSIEMVKFIQCTQFINKDLHMYHHETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGNGVTEIEKGIAERNGIKLEENISPNAVRERGFNFDDARLMRGAWRNEPNPDSCKEFFRCLAICHTVLPEGDEAPEKIRYQAASPDEAALVIAAKHFGFFFYREFECYSFK 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2615g00007 539 SUPERFAMILY Calcium ATPase, transduction domain A 122 265 IPR008250 -
Gabi2615g00007 539 NCBIfam phospholipid-translocating P-type ATPase 39 531 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Gabi2615g00007 539 FunFam Phospholipid-transporting ATPase 100 269 - -
Gabi2615g00007 539 Gene3D - 104 268 - -
Gabi2615g00007 539 Pfam E1-E2 ATPase 122 361 - -
Gabi2615g00007 539 SUPERFAMILY Calcium ATPase, transmembrane domain M 37 398 IPR023298 -
Gabi2615g00007 539 Pfam Phospholipid-translocating ATPase N-terminal 29 90 IPR032631 -
Gabi2615g00007 539 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 29 531 - -
Gabi2615g00007 539 ProSitePatterns E1-E2 ATPases phosphorylation site. 406 412 IPR018303 -
Gabi2615g00007 539 FunFam Phospholipid-transporting ATPase IC 401 413 - -
Gabi2615g00007 539 Gene3D - 412 535 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2615g00007 Gabi-Chr2615 78807 108875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2615g00007 3 531 Primary Pumps ATPases AT1G59820 78.113 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2615g00007 K14802 - gmx:100815547 967.992