Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2615g00005 ATGGATCCAGCGGCCATGATGAACGCGGGTGCCAACACGGCGTCGTATCACTTGGCGGAGATCTGGTCATTTCCGCCGCCGAGTGGGGGGGAGTCCGGTGGCGGGTTGGGGTTCAGGAGGCCGCAGTTCGGGCACGGGTTTGCGGATTTCGGTGCTGGTCCGACCCGAGACGTTCCAGGCGATGACCCGATTAGTTCGGAGCAGAGAGCTGCGGCGGCGGCGAACCATGGCCATAACAGGAAGAGGCGCGACTCGGAGGAGGAATCAGCTAAGGGTGTCTCCACCAGCAATGGCGGTGGCAATGGCAATGGCAATGGCGTGAGTGATGGTGGTGGTGGAAAACGGATTAAGATATCAGGGAACAGGAATGAGAGCAATAAAGGTGAAGCAGAACCCAGTTCAGGAAAGCCTGCGGAGGAAACTACTCAGCCACCTCCTGAGCCTCCTAAGCAAGACTATATCCATGTCCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTAGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATTCAATCGCTTCAGCGCCAAGTAGAGTTTTTATCAATGAAGCTTGAAACAGTAAATTCAAGACTGACCCCTGGTATTGAAGTATTTACTCCTAAAGATTTTGATCAGCAAACATTTGAGCCAGCCGGATTGCCATTCTCTTCACAAGCTACAAGAGAATATAGCCGGGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGAAGTGGTTTTGAAAGAGCAACGTAG 852 0.5047 MDPAAMMNAGANTASYHLAEIWSFPPPSGGESGGGLGFRRPQFGHGFADFGAGPTRDVPGDDPISSEQRAAAAANHGHNRKRRDSEEESAKGVSTSNGGGNGNGNGVSDGGGGKRIKISGNRNESNKGEAEPSSGKPAEETTQPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLETVNSRLTPGIEVFTPKDFDQQTFEPAGLPFSSQATREYSRGSSPEWLHMQVGSGFERAT 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2615g00005 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Gabi2615g00005 283 CDD bHLH_AtBPE_like 152 237 - -
Gabi2615g00005 283 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Gabi2615g00005 283 Gene3D - 159 232 IPR036638 GO:0046983
Gabi2615g00005 283 SMART finulus 168 218 IPR011598 GO:0046983
Gabi2615g00005 283 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 74 253 IPR024097 GO:0006355
Gabi2615g00005 283 FunFam Basic helix-loop-helix transcription factor 159 231 - -
Gabi2615g00005 283 MobiDBLite consensus disorder prediction 123 138 - -
Gabi2615g00005 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 230 IPR036638 GO:0046983
Gabi2615g00005 283 Coils Coil 209 229 - -
Gabi2615g00005 283 MobiDBLite consensus disorder prediction 23 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2615g00005 Gabi-Chr2615 69523 72055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2615g00005 1 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 56.379 2.20e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2615g00005 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2615g00005 - - gmx:100794893 369.777