Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2614g00004 ATGGCTGATGTGAATCTGACGGAAGGGGCCATATCGACTATGAGTAGTGACGATTTCTCTTCGGAGGATTTGAGGCCAGTGCTTCAAGTTATCGACTTGAAGCTGGTGCAGTCGTCGCAGCACAGCCACAGCGAGAGGTACAGGTTGGTGCTTTCGGATGGCTCGCTTTATCAGCAAGGGATGCTCGGCACGCAGAAGAACGAGTTGATCCATTCTGGAAGGTTGCAGAAAGGTTCCGTTGTTAAGCTCACTCAGTTCGTTTGCAACGCTGTCCAGGGCCGCAAGATTATTATCATCATTGAGCTTGAAGTCTTATTGGACAAATGTGATTTGATTGGAGAACCTATCCCAGCATCAAAAAATGTATCTGCACAATCTGCTTCTGGTCAGTCAGGGATCAACTCTGGGAATTCACAGTCTTTAAATAGTAGTTCACATGCAGGCGGCGTGCCTGCTAGAGCAAATGTGGCTGGGTCATCCCCGGACCACCCGAAAGTGAATCCTCCTCCTACTAGTGCTTATTCTAGTAATTCTGACTCTGCAAGATATGGTGCATCTAATGCCCCTCCTATTTATCCTAAAGTAGAGCCTGGAGTCAGTTTGCCTAGATCAACACCATTCAGTGGCACTTATGGTGATCAGAACACAAGTTTTCGCAGTCACCAATCTGAGGCTTCAAGGCCGTTGCAAAATTCTTATGCTCGTCCACCTCAGCCCATGTACCGACAGCAATCTCCAATGTACACTAATAGAGGGCCTGTAGGAAGAAATGAAGCTCCCCCCAGGATAATTCCAATAGCTGCGTTAAATCCATACCAGAATATGTGGACAATTAAAGCTAGAGTAACGGCTAAGGGAGAACTCAGGCACTATAATAATGCCCGAGGTGAGGGCAAAGTATTTTCTTTTGATCTTCTGGATTCTGACGGTGGAGAAATTCGGGCAACTTGCTTTAATACCGTGGCTGATCAGTTCTATAATGTAATTGAAGCTGGTAAAGTCTATCTGGTTTCCAGGGGAAGCATAAAGCCAGCGCAAAAGAATTTTAATCACCTTCGTAATGATCAAGAGCTAACCCTTGATATTACATCAATCATACAGCCTTGCCTTGACGATGATAACTCAATTCCAAAGCAGACGTTCAATTTTCGTCCCATTATTGAAGTTGAAAGTGTGGAAACCAACAGTATTGTAGATGTGATTGGTGTGGTGTCTTCTATTAGTCCTACAGCTTCAATCATGAGAAAAAATGGCACTGAAACTCAGAAAAGAACTCTCCAATTGAAAGACATGTCTGGCCGCAGTGTTGAATTAACTTTATGGGGAAGTTTTTGCAATGCTGAAGGACAAAGGCTGCAAAGTATTTGTGATTCTGGGGCATTTCCAGTTTTGGCTGCAAAAGCAGTCAGAGTAAATGATTTCAATGGGAAGTCTATTGGGACCATAGCCACTAGCCAGCTATTTGTAGAGCCTGATTTCCCAGAGGCGTATACACTGAAACAATGGTTTGAGAGGGAAGGGAGGAATGTACCAGCTGTCTCTATTTCCAGAGAAACGTCCAGTTTTGGTAAGACTGATGTGCGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTGTCTGTGCAAGCGTTTCATTCATTAAAGTTGATAATTTCTGCTACACAGCTTGTCCTATCATGATAGGGGATAGGCAATGTAACAAAAAGGTGACTAATAATGGAGATGGAAAATGGCGTTGTGACAGATGTGATCAATCTATTGACGCATGTGATTATAGGTACTTACTGCAATTCCAGATACAGGATCACACTGGCTTAACATGGGTTACTGCTTTCCAGGAGGGTGGTGAGGAGATCATGGGTATACCTGCAAAAGATTTGTATTATCTGAAATTTGAAGAACAAGAGGATGAAAAATTTGCAGAAATCATCCGTAAGGTTCTCTTCAATAAATATGTGTTCAAGTTAAAAGTAAAGGAGGAGACATTCAGTGATGAACAACGTGTTAAGTCAACGGTAGTAAAAGCAGAGAAGGTAAACTATGCGTCTGAATCTAGATTTGTTTTGGATTTGATTGATAAGCTTAAGGATGAGAAATCAAAAGGTACCCATACTAACACTGTAATCAATAATGCTGGACTGGGGAGTGTTGAAACTGGACAAGCTACGCCACCAGTTTATAATTCTATAAAGAGCAACACTAATGCTAGTAGAGATTATGGGATTCCAGCAAATCAAGTGGGTCAGTATGGAAACCAATATAACAGTTCTTTTCCTTCAGCAGGGCCTCCTGGTTCACATATGTCATGTAACAATTGTGGAGGCTCTGATCATATCTCTGCACTTTGCCCAAATATTAGAAATCGACCTGGACAGTCTGGGGGAGGGGCCTTCGCAAACAGGGTATCTGCTGGATCAGGTGTTGTTTCTGGTGAATGCTTTAAGTGCCATCAAACTGGCCATTGGGCAAGAGACTGTCCGGGTTTCAATGCAGCACCTCCAGCTTATGGAAGCAGTAATGTAATGCAAGGAAGATACGGGATTGCTCAAAAGCAAGAATTTGGAGGATATTGA 2604 0.4293 MADVNLTEGAISTMSSDDFSSEDLRPVLQVIDLKLVQSSQHSHSERYRLVLSDGSLYQQGMLGTQKNELIHSGRLQKGSVVKLTQFVCNAVQGRKIIIIIELEVLLDKCDLIGEPIPASKNVSAQSASGQSGINSGNSQSLNSSSHAGGVPARANVAGSSPDHPKVNPPPTSAYSSNSDSARYGASNAPPIYPKVEPGVSLPRSTPFSGTYGDQNTSFRSHQSEASRPLQNSYARPPQPMYRQQSPMYTNRGPVGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGEGKVFSFDLLDSDGGEIRATCFNTVADQFYNVIEAGKVYLVSRGSIKPAQKNFNHLRNDQELTLDITSIIQPCLDDDNSIPKQTFNFRPIIEVESVETNSIVDVIGVVSSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGSFCNAEGQRLQSICDSGAFPVLAAKAVRVNDFNGKSIGTIATSQLFVEPDFPEAYTLKQWFEREGRNVPAVSISRETSSFGKTDVRKTISQIKDEKLGTSEKPDWISVCASVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSIDACDYRYLLQFQIQDHTGLTWVTAFQEGGEEIMGIPAKDLYYLKFEEQEDEKFAEIIRKVLFNKYVFKLKVKEETFSDEQRVKSTVVKAEKVNYASESRFVLDLIDKLKDEKSKGTHTNTVINNAGLGSVETGQATPPVYNSIKSNTNASRDYGIPANQVGQYGNQYNSSFPSAGPPGSHMSCNNCGGSDHISALCPNIRNRPGQSGGGAFANRVSAGSGVVSGECFKCHQTGHWARDCPGFNAAPPAYGSSNVMQGRYGIAQKQEFGGY 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2614g00004 867 FunFam Replication protein A subunit 262 372 - -
Gabi2614g00004 867 FunFam Replication protein A subunit 514 705 - -
Gabi2614g00004 867 FunFam Replication protein A subunit 375 513 - -
Gabi2614g00004 867 MobiDBLite consensus disorder prediction 121 149 - -
Gabi2614g00004 867 ProSiteProfiles Zinc finger CCHC-type profile. 823 837 IPR001878 GO:0003676|GO:0008270
Gabi2614g00004 867 CDD RPA1_DBD_C 531 704 IPR047192 -
Gabi2614g00004 867 Gene3D - 375 513 IPR012340 -
Gabi2614g00004 867 MobiDBLite consensus disorder prediction 121 251 - -
Gabi2614g00004 867 SUPERFAMILY Nucleic acid-binding proteins 528 705 IPR012340 -
Gabi2614g00004 867 Pfam Replication factor-A C terminal domain 547 696 IPR013955 -
Gabi2614g00004 867 Pfam Replication factor-A protein 1, N-terminal domain 6 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gabi2614g00004 867 Gene3D - 262 372 IPR012340 -
Gabi2614g00004 867 Gene3D - 753 843 - -
Gabi2614g00004 867 SUPERFAMILY Nucleic acid-binding proteins 262 376 IPR012340 -
Gabi2614g00004 867 MobiDBLite consensus disorder prediction 203 251 - -
Gabi2614g00004 867 Gene3D - 4 119 IPR012340 -
Gabi2614g00004 867 PANTHER REPLICATION FACTOR A 1, RFA1 276 700 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi2614g00004 867 SMART c2hcfinal6 779 795 IPR001878 GO:0003676|GO:0008270
Gabi2614g00004 867 SMART c2hcfinal6 822 838 IPR001878 GO:0003676|GO:0008270
Gabi2614g00004 867 FunFam Replication protein A subunit 5 119 - -
Gabi2614g00004 867 Pfam OB-fold nucleic acid binding domain 276 365 IPR004365 GO:0003676
Gabi2614g00004 867 SUPERFAMILY Retrovirus zinc finger-like domains 771 838 IPR036875 GO:0003676|GO:0008270
Gabi2614g00004 867 NCBIfam replication factor-a protein 1 (rpa1) 237 704 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi2614g00004 867 CDD RPA1N 9 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gabi2614g00004 867 CDD RPA1_DBD_B 397 504 - -
Gabi2614g00004 867 SUPERFAMILY Retrovirus zinc finger-like domains 813 841 IPR036875 GO:0003676|GO:0008270
Gabi2614g00004 867 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
Gabi2614g00004 867 SUPERFAMILY Nucleic acid-binding proteins 381 510 IPR012340 -
Gabi2614g00004 867 Gene3D - 514 705 IPR012340 -
Gabi2614g00004 867 Pfam Replication protein A OB domain 386 489 IPR031657 -
Gabi2614g00004 867 Pfam Zinc knuckle 822 837 IPR001878 GO:0003676|GO:0008270
Gabi2614g00004 867 MobiDBLite consensus disorder prediction 169 184 - -
Gabi2614g00004 867 CDD RPA1_DBD_A 265 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2614g00004 Gabi-Chr2614 37709 41008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2614g00004 4 809 Core DNA Replication Machinery Family AT5G45400 53.420 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2614g00004 K07466 - gmx:100778597 1263.44