LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2612g00005	ATGTCTATCACTGCTTCCATGGCCGAATCGTGCCTTCTCTCTTCACACTCCTCACTCTTCTACACCAAAACCAAAAACCTCTTTTTCTCTGCTCCCTCCAAACCCTTTAAACTCCAATTTTCGTGCCTCACTCCTTCAGCTTCACCTTCTCTCTCTCTAACCTCAAGAACCCATCGTTATCCCCTTCTCACGTTCGTGGCCCAGACCTCTGATTGGGCTCAGCAAGAAGAAGACAACACCGTCACCGTCGAAGACGAAGAAGAAGAAGAAGAAGGTTTCAACGAAACCGAAGCGGCTCTTTCGGAATGGGAACCCAGCGGCGAAGACGCTGAAACCGGTGAAGAAGTAGAAGGTGGTTTTGTTGAACCACCTGAAGATGCGAAACTCTTTGTTGGGAACTTGCCTTACGATGTTGATAGTCAGAAACTGGCCATGCTTTTCGAGCAAGCTGGAACCGTTGAGATTGCTGAGGTTATTTATAATAGGGAAAGTGACCAGAGTCGTGGGTTCGGATTTGTAACCATGAGTACCGTTGAAGAAGCTGAGACTGCTGTGGAGAAGTTCAACCGTTATGATTTAGATGGAAGACTTTTGACTGTTAATAAGGCTTCCCCAAGAGGGTCTCAGCCTGAACGCCCACCTCGTAACTTCAGTTCACCTCGTAGCTTTGAGACTGGCTTAAGAGTCTATGTTGGTAACTTGCCATGGGATGTTGATAATGCACGGCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGTGAAGGCTCGGGTAGTCTATGACAGAGAAACTGGTCGATCCCGTGGCTTTGGCTTTGTCACAATGTCCGATGAGACGGAGATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGACGGAAGGGCAATCAGAGTGAATGTTGCCGAGGACAGGCCCAGGCGTACCTTTTGA	936	0.4797	MSITASMAESCLLSSHSSLFYTKTKNLFFSAPSKPFKLQFSCLTPSASPSLSLTSRTHRYPLLTFVAQTSDWAQQEEDNTVTVEDEEEEEEGFNETEAALSEWEPSGEDAETGEEVEGGFVEPPEDAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRESDQSRGFGFVTMSTVEEAETAVEKFNRYDLDGRLLTVNKASPRGSQPERPPRNFSSPRSFETGLRVYVGNLPWDVDNARLEQIFSEHGKVVKARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLDGRAIRVNVAEDRPRRTF	311

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2612g00005	311	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	127	205	IPR000504	GO:0003723
	Gabi2612g00005	311	PANTHER	OS02G0815200 PROTEIN	11	307	-	-
	Gabi2612g00005	311	SUPERFAMILY	RNA-binding domain, RBD	123	221	IPR035979	GO:0003676
	Gabi2612g00005	311	MobiDBLite	consensus disorder prediction	201	220	-	-
	Gabi2612g00005	311	MobiDBLite	consensus disorder prediction	74	115	-	-
	Gabi2612g00005	311	SUPERFAMILY	RNA-binding domain, RBD	220	309	IPR035979	GO:0003676
	Gabi2612g00005	311	CDD	RRM2_NsCP33_like	228	303	-	-
	Gabi2612g00005	311	FunFam	31 kDa ribonucleoprotein, chloroplastic	217	311	-	-
	Gabi2612g00005	311	FunFam	31 kDa ribonucleoprotein, chloroplastic	67	210	-	-
	Gabi2612g00005	311	SMART	rrm1_1	228	301	IPR000504	GO:0003723
	Gabi2612g00005	311	SMART	rrm1_1	128	201	IPR000504	GO:0003723
	Gabi2612g00005	311	CDD	RRM1_PSRP2_like	128	207	-	-
	Gabi2612g00005	311	Gene3D	-	211	310	IPR012677	-
	Gabi2612g00005	311	Gene3D	-	66	210	IPR012677	-
	Gabi2612g00005	311	MobiDBLite	consensus disorder prediction	78	115	-	-
	Gabi2612g00005	311	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	229	299	IPR000504	GO:0003723
	Gabi2612g00005	311	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	129	198	IPR000504	GO:0003723
	Gabi2612g00005	311	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	227	305	IPR000504	GO:0003723
	Gabi2612g00005	311	MobiDBLite	consensus disorder prediction	202	220	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2612g00005	Gabi-Chr2612	81160	84169	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2612g00005	80	309	Eukaryotic Initiation Factors Gene Family	AT3G16380	32.143	1.31e-22	96.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2612g00005	-		-	gmx:100790280	429.098