Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2607g00002 ATGAAGGAGGAACTAAAAACACCTATGGACGCATCGGCAGCTAGCTGGTTATCTGATTTGGAAATGGATGATTACAATTTATTTCCTGAGGAATGCCCTTTGAACTTGCTTGATGTTGATGATGAAGAGTTCCTTTCACATGACATAGCAAGTGCCTTAGAGGGAAAGGCCCTGCAACAATCTTTATCTCCTGAGTGCACTTCCATAACTCTGAGCAACTCATCAACTGATGAAACCAGTTTTGACTTTGAGAGACCAACTAAGGTGTTGAAAACAATTAGCACAAGTTGTAACTCATCAAGCATCACTGAAAACTTTTCATCAAAACTTTCCCCATCACCGTCCATATCTTCCTTTCAGTCACAGATTCTGTCTTTTGACAACTCAAACGCATCCCCTGCTAACACCACCCAGTTTTATGGGTTTGACTGTGCCTTAAACCCAAATCAGAACGATGTGGTTTCAGTGTCACTTTCCCAATTGGGAAATAAGCATTTCCCAACTCAAACCCCAAACGGGTCCTCAAAAAATCAAAACTTTGAAACAAAAACCTCACAAACTAAGAGGTCTCCACTTCACGCTCAGGATCACATCATGGCTGAGAGAAAGCGAAGAGAGAAGCTCAGCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTAAAAAAGATGGACAAGGCTTCGGTATTAGGAGACGCTATCAAATATGTGAAAGAGCTTAAGGAGCGTTTAGCAGTTCTAGAAGAACAGGGTAAGAAAACGAGGGTAGAGTCTGTAATGGTTCTGAACAAACCAGAACTCAGTGGTGATGATGATTCCTCCTCATGTGATGAGAGCGTTGATGCTGCTGGTGCCACTGAATCACTCCTCCAAGTTGAAGCAAGAGTTTCAGGGCAAGAGATGCTGATTAGGATCCACAGCCAGAAACAAAAGGGTCTTCTGGTCAAAATACTGGCCGAGATTCAAAACCTTCACCTATTCGTCATCAATAGCAATGTCTTACCTTTTGGAAAATCTATAATTGACATAACCATCATTGCTCAGATGGGGGATGGTTACAACTTGACCATTAAGGGACTTGTCAAGAATCTACGCGCGGCAATATGTAAATTTATGTCACAGCATGTGGCGTGA 1137 0.4257 MKEELKTPMDASAASWLSDLEMDDYNLFPEECPLNLLDVDDEEFLSHDIASALEGKALQQSLSPECTSITLSNSSTDETSFDFERPTKVLKTISTSCNSSSITENFSSKLSPSPSISSFQSQILSFDNSNASPANTTQFYGFDCALNPNQNDVVSVSLSQLGNKHFPTQTPNGSSKNQNFETKTSQTKRSPLHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKELKERLAVLEEQGKKTRVESVMVLNKPELSGDDDSSSCDESVDAAGATESLLQVEARVSGQEMLIRIHSQKQKGLLVKILAEIQNLHLFVINSNVLPFGKSIIDITIIAQMGDGYNLTIKGLVKNLRAAICKFMSQHVA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2607g00002 378 CDD bHLH_AtNAI1_like 193 265 - -
Gabi2607g00002 378 Coils Coil 231 258 - -
Gabi2607g00002 378 MobiDBLite consensus disorder prediction 163 192 - -
Gabi2607g00002 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 258 IPR036638 GO:0046983
Gabi2607g00002 378 Pfam Helix-loop-helix DNA-binding domain 196 241 IPR011598 GO:0046983
Gabi2607g00002 378 PANTHER BHLH TRANSCRIPTION FACTOR 58 372 - -
Gabi2607g00002 378 MobiDBLite consensus disorder prediction 163 194 - -
Gabi2607g00002 378 Gene3D - 177 258 IPR036638 GO:0046983
Gabi2607g00002 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 192 241 IPR011598 GO:0046983
Gabi2607g00002 378 SMART finulus 198 247 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2607g00002 Gabi-Chr2607 46338 47883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2607g00002 182 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.259 2.69e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2607g00002 HLH 4.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2607g00002 - - gmx:100788128 506.138