Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2607g00001 ATGACATCAATGGAAGAATCGTGGACTAGTTGGCTATGTGATATGGAAGCAGACGATTTCATCAATCAACCAGACAAAAACTTTGATGATGGAAGTTTAGCATCTCATTGTCAAGATATAGCCAGTGCCCTACAGCAGGAGAACCCGCAAAGGGCTTTCTCTACCGAGAGTCACTGTTCTTATGCCACCTTCAACATCGAAAACACCAGCATCGTGAACAATAATTCTTCAGTGACAGAGAGGCCTTCTGAGGTACTCAATACTTGCAGCACAAACTCACAAAAAAGGGGTTCTTTTCCCTGGTCCTACATTCTTTCGTTTGATAACGCGAATACACCATCAATAAAGGTTGAATCAGCATTGAAACAAGAAAGCAAGGTTGTGAATCATAAGAGACCTTTGCCTTCAAAGAATGAACTGAGACACGTTGTGAATCCTCACCACACACATGATCACATAATTGCTGAAAGAAAAAGGAGAGAAAAAATTAGCCAGCTTTTCATAGCTCTCTCAGCCCTTATTCCAGGCCTCCAAAAGATGGACAAAGCTTCTGTGTTAGGGGACGCTATAAAGTACGTGAAAGTGCTCAAGGAGCAAGTGAAACAAATGGAGGAACAGAGCAAAAGGAGAAGCGTAGAATCGGTGGTGTTTGTGAAGAAATCTCAGCTCTCTGCGGACGATGATGTCATCTCAGATACATCCTCAAATTCCTGCGATGGAAACTCCGATGATCCATCGAAAATAAACCTGTCACTGCCAGAAGTTGAAGCAAGGGTGTCAGAGAAGAACGTGCTGATTCGAATCCACTGCCAGAAAGAAAAGGCAACGCTGCTTAACATATTTAGAGAGATTGAGAAACTTCATCTCTCAGTTATCAATAACAGTGCATTTTATTTCGGTTCCTCCGTTCTGGTCGTAACCGTCATAGCCGAGATGGAGGGTGAGTTCAACATGAGCGTGAATGAGCTAGCTAAGAACATCAGAGTAGGACTGATGCAATTTATGTAG 1008 0.4276 MTSMEESWTSWLCDMEADDFINQPDKNFDDGSLASHCQDIASALQQENPQRAFSTESHCSYATFNIENTSIVNNNSSVTERPSEVLNTCSTNSQKRGSFPWSYILSFDNANTPSIKVESALKQESKVVNHKRPLPSKNELRHVVNPHHTHDHIIAERKRREKISQLFIALSALIPGLQKMDKASVLGDAIKYVKVLKEQVKQMEEQSKRRSVESVVFVKKSQLSADDDVISDTSSNSCDGNSDDPSKINLSLPEVEARVSEKNVLIRIHCQKEKATLLNIFREIEKLHLSVINNSAFYFGSSVLVVTVIAEMEGEFNMSVNELAKNIRVGLMQFM 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2607g00001 335 PANTHER BHLH TRANSCRIPTION FACTOR 22 334 - -
Gabi2607g00001 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 213 IPR036638 GO:0046983
Gabi2607g00001 335 Coils Coil 186 213 - -
Gabi2607g00001 335 CDD bHLH_AtNAI1_like 147 221 - -
Gabi2607g00001 335 Pfam Helix-loop-helix DNA-binding domain 152 196 IPR011598 GO:0046983
Gabi2607g00001 335 Gene3D - 143 211 IPR036638 GO:0046983
Gabi2607g00001 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Gabi2607g00001 335 SMART finulus 153 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2607g00001 Gabi-Chr2607 20295 22552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2607g00001 145 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 51.042 7.11e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2607g00001 HLH 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2607g00001 - - gmx:100803386 361.303