Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2606g00005 ATGGGTTCAAGTCGCTCAGATGGCTCTGCCACTGGCAAAGAACGTTTACGTTGGTCACAAGAACTCCATGATCGCTTTGTGGAGGCTGTAAATAGGCTTGGTGGTCCTGATAGGGCAACACCAAAAAGTATATTAAAGGGGATGAAAGCAATGGGTGTTTCAGAATTGAATATTTATCATGTCAAAAGCCACTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCACCACAAGAGGAAAGCTTGAGAGGAGAAGCATATCAGATATACTTCCGAATTTTAGTTCTATATCTGCTCTTCAGCTAAAGGAAGTTCTTCAAATGCAGAAGGAGGTGCAAAAAAGCTTGAGTGATCAAGTAGAGGTTGAGAGAAGCATGAAGGAAAAAATTGAAGCACAAGGAAATTACCTGGATAGAATTGGACAAAGTTACCATTGCAGAACAATCATTGGAAAAGGTTGCAAACCTTTTGTTGCTGCAGCTACACCTCTACCTTCTCTTTCTGAAGAATATGAATCTTTGGAAGCACAACATGAGGAAGAACATCAATCAACCAAAAAACAAAGGATCACAGAGGAGGGTGTTTTTCCAAGAAATTTTGAACTAGTATCATCCACCACACCAGAATTCTACAATCAAACTTGGAATCTTTCTTGGAGTCAGCTTGCAGCAGAATGTCAATCACCTTTAGTGCCTGGCTTCTTATTATAA 714 0.4006 MGSSRSDGSATGKERLRWSQELHDRFVEAVNRLGGPDRATPKSILKGMKAMGVSELNIYHVKSHLQKYRISKLIPESTTRGKLERRSISDILPNFSSISALQLKEVLQMQKEVQKSLSDQVEVERSMKEKIEAQGNYLDRIGQSYHCRTIIGKGCKPFVAAATPLPSLSEEYESLEAQHEEEHQSTKKQRITEEGVFPRNFELVSSTTPEFYNQTWNLSWSQLAAECQSPLVPGFLL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2606g00005 237 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 11 185 IPR044848 GO:0003700
Gabi2606g00005 237 Gene3D - 12 73 - -
Gabi2606g00005 237 Pfam Myb-like DNA-binding domain 16 69 IPR001005 -
Gabi2606g00005 237 Coils Coil 165 189 - -
Gabi2606g00005 237 FunFam Two-component response regulator 9 73 - -
Gabi2606g00005 237 NCBIfam myb-like DNA-binding domain, SHAQKYF class 13 71 IPR006447 GO:0003677
Gabi2606g00005 237 SUPERFAMILY Homeodomain-like 12 70 IPR009057 -
Gabi2606g00005 237 Pfam MYB-CC type transfactor, LHEQLE motif 102 141 IPR025756 -
Gabi2606g00005 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 73 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2606g00005 Gabi-Chr2606 53516 60087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2606g00005 3 138 G2-like Transcription Factor Family AT4G28610 48.592 1.12e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi2606g00005 Myb_DNA-binding 3.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2606g00005 - - psat:127127459 317.39