Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2606g00004 ATGGAAATGGCTTCTAGCCCCCGCACAGTTGAAGAGATCTTCAAGGACTACAGTGCTCGAAGAACTGGTGTTGTTCGTGCTCTCACTCAAGATAAGGAGAACTTGTGCCTCTATGGACATCCCAATGAAGCCTGGGAAGTGACTCTGCCAGCAGAGGAAGTTCCTCCGGAGCTACCTGAGCCAGCTCTTGGCATCAACTTTGCTAGAGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTGGCCTTTTATCTTGGAGCTCGTCTCAACCGCAATGAAAGGAAACGTTTATTTAGTTTGATCAACGATCTTCCCACCGTTTTTGAAGTTGTGACTGACAGGAAACCAATTAAGGACAAGCCCACTGTGGATAGTGGAAGCAAATCTCGGGGAAGCACCAAGAGATCTAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTTGCAGATGAGGGTTATGAGGAGGATGAAGATGAGCATAGTGAAACTCTTTGTGGGAGCTGTGGCGGAAATTACAATGCGGATGAATTTTGGATTGGCTGTGATATATGTGAGAGGTGGTTCCATGGGAAATGTGTGAAGATTACTCCTGCAAAGGCTGAGAGCATCAAGCAATATAAATGTCCATCATGCAGCATGAGGAGGGGCAGGCCCTAG 687 0.4745 MEMASSPRTVEEIFKDYSARRTGVVRALTQDKENLCLYGHPNEAWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTDRKPIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSMRRGRP 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2606g00004 228 ProSitePatterns Zinc finger PHD-type signature. 175 221 IPR019786 -
Gabi2606g00004 228 Pfam PHD-finger 175 222 IPR019787 -
Gabi2606g00004 228 SMART PHD_3 174 222 IPR001965 -
Gabi2606g00004 228 MobiDBLite consensus disorder prediction 137 154 - -
Gabi2606g00004 228 Pfam Alfin 9 123 IPR021998 GO:0006355|GO:0042393
Gabi2606g00004 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 222 IPR013083 -
Gabi2606g00004 228 CDD PHD_AL_plant 174 224 IPR044104 -
Gabi2606g00004 228 MobiDBLite consensus disorder prediction 129 165 - -
Gabi2606g00004 228 ProSiteProfiles Zinc finger PHD-type profile. 172 224 IPR019787 -
Gabi2606g00004 228 FunFam PHD finger alfin-like protein 167 223 - -
Gabi2606g00004 228 SUPERFAMILY FYVE/PHD zinc finger 163 226 IPR011011 -
Gabi2606g00004 228 PANTHER CPG BINDING PROTEIN 6 227 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2606g00004 Gabi-Chr2606 45220 52101 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2606g00004 4 227 Alfin-like Transcription Factor Family AT5G05610 74.153 4.85e-112 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi2606g00004 Alfin 6.3e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2606g00004 K26274 - qsa:O6P43_026231 431.795