Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi259g00003 ATGGTTGGAGTAGGTGATAAGGGGTTGTTGGAATGTGTAAGGAAGTGCACTCCACCACCGTTCTTATTGAAGACCTACATGCTCGTGGAGGATCCGGCCACCGACGACATCGTATCGTGGAATGATGATGGGACGGCGTTTGTGGTGTGGCAGCCGGCGGAGTTTGCCCGTGATCTCCTCCCAACACTCTTCAAGCATAGCAACTTCTCTAGCTTTGTTCGGCAGCTCAATACCTATGGCTTTCGTAAAGTTGCAACAAGTAGATGGGAGTTTTGCAACGACAGGTTCAGGAAAGGTGAAAGAGAATTGCTATGTGAGATTCGGAGAAGAAAAGCTTGGACAAATAAACAACAACAAAATGCACCAAACCAAACCACACCCCAAGATTCTGATGAAGATCAAAGGTCATCATCAACCTCATCATCTTCGGGTTACACTAATCTTGTGGATGAAAACAAACGTCTCAAGAAGGAGAATGGGATGTTGAATTCTGAGCTCACATGTATGAAAAGGAAGTGTAAGGAACTGCTTGATTTGGTTGCCAAATATTCACATGCAAAGGAAAAAGAAGAAGAAGAAGATGAAAGGCCAATGCTGTTTGGAGTGAGACTAGATGTTAATGGAGAAAGGGATATGAAGAGGAATAGACCTGAGATAAGTGAAAGCGCAAGCATGTTGCTTTCTCAGTCATGCAAATAG 699 0.4406 MVGVGDKGLLECVRKCTPPPFLLKTYMLVEDPATDDIVSWNDDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNDRFRKGERELLCEIRRRKAWTNKQQQNAPNQTTPQDSDEDQRSSSTSSSSGYTNLVDENKRLKKENGMLNSELTCMKRKCKELLDLVAKYSHAKEKEEEEDERPMLFGVRLDVNGERDMKRNRPEISESASMLLSQSCK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi259g00003 232 Gene3D - 13 111 IPR036388 -
Gabi259g00003 232 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 183 IPR027725 -
Gabi259g00003 232 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi259g00003 232 MobiDBLite consensus disorder prediction 115 149 - -
Gabi259g00003 232 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi259g00003 232 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi259g00003 232 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi259g00003 232 MobiDBLite consensus disorder prediction 115 150 - -
Gabi259g00003 232 FunFam Heat stress transcription factor B-4 13 111 - -
Gabi259g00003 232 MobiDBLite consensus disorder prediction 211 232 - -
Gabi259g00003 232 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Gabi259g00003 232 Coils Coil 145 193 - -
Gabi259g00003 232 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi259g00003 232 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi259g00003 Gabi-Chr259 76842 78974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi259g00003 18 183 HSF AT2G41690 61.667 1.56e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi259g00003 HSF_DNA-bind 6.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi259g00003 K09419 - gmx:100802739 362.459