Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2596g00106 ATGGGACGATCACCTTGCTGTGAGAAGGTGGGTTTAAAGAAAGGACCATGGACTCCTGAGGAAGATCAGAAGCTCTTGGCTTATATTGAAGAACATGGTCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGACTTCAGAGGTGTGGTAAGAGCTGCAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGAGGAAAGTTCAGTTTGCAAGAAGAACAAACCATCATTCAACTCCATGCACTCTTAGGGAACAGGTGGTCAGCAATAGCCACACATTTGCCAAAGAGAACAGATAATGAGATCAAGAACTATTGGAATACACATCTTAAGAAAAGGTTAACCAAAATGGGAATTGACCCTGTGACACACAAGCCCAAAAATGATGCCCTTCTCTCTAGTGTAGGCCATTCCAAAAGTGCTGCAAACCTTAGCCACATGGCTCAGTGGGAGAGTGCTAGGCTCGAAGCAGAAGCAAGATTGGTTAGGGAATCAAAACTACGTTCACATTCATTGCAGAATCAGCTTGGAAGTTCTGTCTTTCCACCATCATCTTCATCTCCAGCACTTAACAAACAAGATGCAATGAAGGCTTGGAACAATGGTGGATGGTTAAAATCTAATGAGGGAAATGGTGACCTTGAGTCTCCTACGTCTACACTATCAACATTCTCTGAGAACAATGCGCCACCAATTATGAGTACTAGTAGTGGAAATATTGGAGAAAACACAGAGCTTATGATTGAGTTTGTGGGCACATCAGGTTCTTCAGAGAGAGGGATTGTGAAAGAAGAAGGTGAACAAGAGTGGAAAGGTTATGAAAGCTCGACCCATTTGCCAGAATACAAAGATGGTATGGAAAATTCACTGCCTTTTGAATCTACCTTGCATGAGTTGACAATGAGCATGGAAAGCACGTGGGGTTCTGAGTCTCTTATTAGGACCAGTACTAGTGCACATGTCCCTGTTGGAGATCCAATTGCTGAGGAGGGGTTCACTAATCTTTTGCTGAATACTAACTCCGATGACCGGAGTTTTTCACCGGAGGAGGAGGGTGGTGGAGAGTCTAATACTTGTGATGGTAGTGGTAGTGGTACCAGTGGCAGTGACTTTTGTGAAGATAACAAGAACTACTGGAACAGCATTCTTAATTTAGTGAATTCTTCACCTTCTGATTCACCCATGTTCTGA 1197 0.4336 MGRSPCCEKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSVGHSKSAANLSHMAQWESARLEAEARLVRESKLRSHSLQNQLGSSVFPPSSSSPALNKQDAMKAWNNGGWLKSNEGNGDLESPTSTLSTFSENNAPPIMSTSSGNIGENTELMIEFVGTSGSSERGIVKEEGEQEWKGYESSTHLPEYKDGMENSLPFESTLHELTMSMESTWGSESLIRTSTSAHVPVGDPIAEEGFTNLLLNTNSDDRSFSPEEEGGGESNTCDGSGSGTSGSDFCEDNKNYWNSILNLVNSSPSDSPMF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2596g00106 398 CDD SANT 69 112 IPR001005 -
Gabi2596g00106 398 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi2596g00106 398 CDD SANT 16 61 IPR001005 -
Gabi2596g00106 398 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi2596g00106 398 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi2596g00106 398 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 224 - -
Gabi2596g00106 398 SMART sant 66 114 IPR001005 -
Gabi2596g00106 398 SMART sant 13 63 IPR001005 -
Gabi2596g00106 398 FunFam MYB-related transcription factor 13 66 - -
Gabi2596g00106 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi2596g00106 398 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi2596g00106 398 MobiDBLite consensus disorder prediction 208 241 - -
Gabi2596g00106 398 Gene3D - 69 116 - -
Gabi2596g00106 398 FunFam MYB transcription factor 69 116 - -
Gabi2596g00106 398 Gene3D - 13 66 - -
Gabi2596g00106 398 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi2596g00106 398 MobiDBLite consensus disorder prediction 340 372 - -
Gabi2596g00106 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2596g00106 Gabi-Chr2596 1070790 1072712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2596g00106 1 398 MYB Transcription Factor Family AT3G01140 55.012 1.97e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2596g00106 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2596g00106 K09422 - jre:108985936 568.155