Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2596g00104 ATGGAAGGAACATCTGGTGTGAGGAAAGGCGCATGGAGTAAATCAGAAGATGACCTTCTCAAAGCATGCGTCCAACTATATGGGGAGGGAAAATGGCACCTTGTTCCTCAAAGAGCTGGCTTGAACAGATGCCGCAAGAGTTGTAGATTGAGGTGGTTCAACTATCTTCAACCAGATATAAAGCGAGGAGAATTCAGTGAAGATGAGGTTGAATTGATGATCAGATTGCATAAGCTTCTCGGGAACAGATGGTCACTGATTGCAGGAAGACTTCCTGGAAGAACTCCAAACGATGTGAAAAATTACTGGAACACTTGCATGCGGAGGAAAGTGAATTCTTCTCACATGAAAGACAAGAACTTAAAGCACGAGGCCCAAACCGTGATACGCCATGAAGTAATAAAGCCTCTACCTCTAACTTTCTCGAAAACATCCCCTTGGTTGCAAGGGAAATTCATTACCTCAGATCAAAGTAGTACCAAAGTTGATATAACTGAAGCAGTTGCAGTTTCATCAGGGTCCATGAATTGGTGCGAAACTTTGCTAGACAACAGGGGAGAAATTGGAGACGGGACGCTTGTGACGGACCTTTGGGATGAAGAGCTTACTTCAATAACAACCAAAGCTTGTGACTTTCAAACACAAGGTCAAACTTGGGCCGATTTTCTTCTTGACGTCAGTTTGTGGGACACTGAAATCTTAAACTTAGGAGATTAA 717 0.4324 MEGTSGVRKGAWSKSEDDLLKACVQLYGEGKWHLVPQRAGLNRCRKSCRLRWFNYLQPDIKRGEFSEDEVELMIRLHKLLGNRWSLIAGRLPGRTPNDVKNYWNTCMRRKVNSSHMKDKNLKHEAQTVIRHEVIKPLPLTFSKTSPWLQGKFITSDQSSTKVDITEAVAVSSGSMNWCETLLDNRGEIGDGTLVTDLWDEELTSITTKACDFQTQGQTWADFLLDVSLWDTEILNLGD 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2596g00104 238 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 122 - -
Gabi2596g00104 238 Gene3D - 9 61 - -
Gabi2596g00104 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Gabi2596g00104 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Gabi2596g00104 238 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Gabi2596g00104 238 Pfam Myb-like DNA-binding domain 62 105 IPR001005 -
Gabi2596g00104 238 SMART sant 61 109 IPR001005 -
Gabi2596g00104 238 SMART sant 8 58 IPR001005 -
Gabi2596g00104 238 FunFam Myb transcription factor 9 61 - -
Gabi2596g00104 238 FunFam Transcription factor MYB113 64 134 - -
Gabi2596g00104 238 CDD SANT 11 56 IPR001005 -
Gabi2596g00104 238 Gene3D - 63 133 - -
Gabi2596g00104 238 CDD SANT 64 105 IPR001005 -
Gabi2596g00104 238 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Gabi2596g00104 238 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Gabi2596g00104 238 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2596g00104 Gabi-Chr2596 1032641 1034109 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2596g00104 2 142 MYB Transcription Factor Family AT1G66370 59.589 1.34e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2596g00104 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2596g00104 - K16166 gmx:100781091 308.145