Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2596g00102 ATGGAAGGATCATCCGGTGTGAGGAAAGGTGCATGGAGTAAATCAGAAGATGACCTTCTCAGAGCATGCGTCCAACTATATGGGCAGGGAAAATGGCACCTTGTTCCTCAAAGAGCTGGCTTGAACAGATGCCGCAAGAGTTGTAGATTGAGGTGGTTGAACTATCTAAGACCAGATATCAACCGGGGAGAATTTGCGCATGATGAGGTTGATTTGATGATCAGATTGCATAAGCTTTTGGGAAACAGATGGTCTCTAATTGCAGGAAGACTTCCCGGAAGAACTCCAAATGATGTGAAAAATTACTGGAACACCAACATGCGGAGGAAAGTGAACTATCACGAGAAAGGAAAGAGCATAAAGCAAGATGCCGAAATAGCGAGACCCCACGAAGTGATAAAGCCTCTACCTCTTACTTTCTCAAAGACATCCCCCTGGTTGCAAGGGAAATTCATTACCTTAGATCATAGTAGTACCAAAGTTGGTATTACTCAATCAGTTTGTGCAGTTTCATCAGGGACCACGAATTGGTGGGAAACTTTGCTAGACGAAATGAGTGACAATGAAGATAACAACACATGCCCCATGGCTATGGAAGATGGGAGGTTTATGACGAACCTTCGGGATGAAGAGTTTACCTCAACAACAACCAAAGCTTGTGACCTTTTTACACAAGGTCAAACTCGTAGTGATTTTTTTCTTGACGTTAGTTTGTGGGACATGGAAATCTTAAATGTAGGAGAATAA 747 0.4284 MEGSSGVRKGAWSKSEDDLLRACVQLYGQGKWHLVPQRAGLNRCRKSCRLRWLNYLRPDINRGEFAHDEVDLMIRLHKLLGNRWSLIAGRLPGRTPNDVKNYWNTNMRRKVNYHEKGKSIKQDAEIARPHEVIKPLPLTFSKTSPWLQGKFITLDHSSTKVGITQSVCAVSSGTTNWWETLLDEMSDNEDNNTCPMAMEDGRFMTNLRDEEFTSTTTKACDLFTQGQTRSDFFLDVSLWDMEILNVGE 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2596g00102 248 Gene3D - 64 132 - -
Gabi2596g00102 248 SMART sant 8 58 IPR001005 -
Gabi2596g00102 248 SMART sant 61 109 IPR001005 -
Gabi2596g00102 248 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Gabi2596g00102 248 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Gabi2596g00102 248 Pfam Myb-like DNA-binding domain 62 105 IPR001005 -
Gabi2596g00102 248 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Gabi2596g00102 248 CDD SANT 11 56 IPR001005 -
Gabi2596g00102 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Gabi2596g00102 248 Gene3D - 9 61 - -
Gabi2596g00102 248 CDD SANT 68 107 IPR001005 -
Gabi2596g00102 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Gabi2596g00102 248 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Gabi2596g00102 248 FunFam Myb transcription factor 9 61 - -
Gabi2596g00102 248 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2596g00102 Gabi-Chr2596 992770 994788 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2596g00102 2 199 MYB Transcription Factor Family AT1G66370 45.652 8.93e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2596g00102 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2596g00102 - K16166 gmx:100778957 315.079