Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2596g00089 ATGGCAAGAAAGAGAAAGGTTGCTGAAGCAGTTGAAGAGAGCAATCCATCTGAGGCAACAATGGAATGGAATGAGGTGATGAAGGAAGCTGCAGCACTAGGAAGTGCAAGGAGATCCAGAAAGAGATTTGTTGGTGTAAGACAAAGGCCATCAGGAAGATGGGTAGCTGAGATTAAAGATACCATTCAGAAGATAAGGGTTTGGTTAGGTACTTTTGATACTGCTGAGGAAGCTGCTAGAGCTTATGATGAAGCTGCTTGCTTGCTTCGTGGTGCCAATACTAGAACAAACTTCTGGCCTTGTTCTCAATCTTCCTCAACTCCTGCACTTCCCTCAAAGATTACCAATATCCTCCTTCAAAGGCTTAAAGCTAGGAATAACCCTTCCTCTCTTTCTTCTTCTTCTACTTCTACTTCCTCTTCCAGTTCTCTTTTTATCAACCACCAACAAAAGCAACAAGAAAATGCATATGGAGCTGAGTCAACTGATTTCTCAATTGACCATTTCACAGATTTCCTTAATGATCATGAAGATTATAGCACAAGCAACAATGAATTTAGTAATAATAGTGCACAAATTGATTACATCACAAGTAGTTTTGAATCATGTTTAACTGAAAAAGATGGCTGCAGGGAAAAGGAAATGGATTTGGAATGTAATTTCAGCAGTGTGAAACAAACATCAAGTGCTGCATTCAATTCAGGAAGGGAAAGAGAAGAAGACAGTGAAGAAGGCATTGATTTGAGTGCACAGGATTTTCAATTCCTTGACAATGTTGTTCCATCAAGTTACTATTCTCCTTTTGAAATTGCTGAAGAGATTGAGGAGCCTGTGGAGCCAGAGAACTATGGTGATGAGCCTTCAATGCTAAGGGATGCAATGAAGAGAATGAAATATGAGAGGAAGTTCTCAGCTTCCCTATATGCCTTCAATGGGATACCTGAGTGCTTGAAGTTGAAACTTGAATCAGGAAACAAAAAGGGAAAAGGACTTTCTGATCAACTAACCAACCTCAAGATGGCTTGTAGCAAAAACAAAATTGAGGGTAATAAGATGGATAAAGAATACATGGGAGCTGTGGATAGGAAAGAGGAAGAAAACCTACAAACATCAATTGGCATGGATTCCTCTTCTTCTTCTTCTTCTTCTTATTCATCCAGTTTTGATGGAGATCTGTTGTTTTGGAATTCACTTGATCTTCCTAATATTTGCTTTGTTAACATGCTGCTAAACGGTTCATTCAATTAG 1248 0.391 MARKRKVAEAVEESNPSEATMEWNEVMKEAAALGSARRSRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSSTPALPSKITNILLQRLKARNNPSSLSSSSTSTSSSSSLFINHQQKQQENAYGAESTDFSIDHFTDFLNDHEDYSTSNNEFSNNSAQIDYITSSFESCLTEKDGCREKEMDLECNFSSVKQTSSAAFNSGREREEDSEEGIDLSAQDFQFLDNVVPSSYYSPFEIAEEIEEPVEPENYGDEPSMLRDAMKRMKYERKFSASLYAFNGIPECLKLKLESGNKKGKGLSDQLTNLKMACSKNKIEGNKMDKEYMGAVDRKEEENLQTSIGMDSSSSSSSSYSSSFDGDLLFWNSLDLPNICFVNMLLNGSFN 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2596g00089 415 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Gabi2596g00089 415 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Gabi2596g00089 415 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Gabi2596g00089 415 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Gabi2596g00089 415 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Gabi2596g00089 415 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Gabi2596g00089 415 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Gabi2596g00089 415 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Gabi2596g00089 415 MobiDBLite consensus disorder prediction 126 152 - -
Gabi2596g00089 415 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 304 - -
Gabi2596g00089 415 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2596g00089 Gabi-Chr2596 899107 900354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2596g00089 36 118 AP2-EREBP Transcription Factor Family AT5G19790 67.470 1.23e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2596g00089 AP2 8.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2596g00089 K09286 - gmx:100796159 580.482