Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2596g00086 ATGGGTTGTGTCAATTCCAAGAAAGGGGTTGCCGGAGCTTCTTCTTCTTCGCCGGTGGAACCGCATGTTGTGCATTCGAGTTCACGAAAACGGAGCAATGGTGGTTCTAAACGCAACATTGTTGTGGAGTCAAGCTTGGCTGTGTCTTCCTCATCGAAAGGCCATTCTGGGGTGGTGGTTTTGGAGACCCAACAACAACAACGACAAGGAGAGAAAAATCAGAAACCAGAGGAATGGAAGAAGGGAAGCTTGAGAGGGGGAATAAATGGGTCATTGAGCATGAAACTTGGAAGTCATAGGTTTGTGGAAGCAGAACAGAAAGCAGCTGGTTGGCCACCATGGCTCACTTCTGTTGCAGGTGAAGCCATTGATGGATGGGTTCCTCTCAAAACTGATTCTTTTGAGAAATTAGATAAGATTGGACAAGGTACATATAGCAGTGTGTTCCAAGCACGTGAAGTTGAAACTGGGAGGATGGTTGCCTTGAAGAAGGTGCGCTTTGACAATCTTCAAGCCGAGAGCATTAGGTTCATGGCGAGAGAAATAATAATTCTCCGCACACTTGACCACCCAAACATCATGAAATTGGAGGGTATAATTACTTCACAACTATCAAATACCATATATCTTGTATTTGAATACATGGAACATGATCTTGCTGGCCTAGTATCTTCTCCAGACATCAAGTTCACTGAGTCACAGATTAAGTGTTACATGCGACAGCTATTAAGTGGACTTGAGCATTGTCACCTTCGAGGTATTATGCATCGAGACATTAAAGTATCCAATATATTAGTGAACAATGAAGGTATTCTCAAGATAGCAGATTTTGGATTAGCAAATAACATTTGCCCAAATAGCAAGCAACCTTTAACAAGTCGTGTGGTGACTCTATGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACAAATTATGGAGTTTCAGTGGATCTGTGGAGTATGGGCTGTGTATTTGCTGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGAAGAACTGAGGTTGAACAATTACACAAGATTTTTAAGCTTTGCGGGTCTCCACCTGAGGAGTTCTGGAGAAAGTGTAAGCTTCCTCTTGCAACAATGTTTAAGCCTCAGATTTACTATGAAAGCTCTCTTCGAGAGAGGTGTAAAGGTTTTCCCTTAACTGCTGTAAACCTACTTGAGACTTTACTGTCCATTGACTCCAACAAGCGCGGTACTGCCTCCTCTGCACTAATGTCTGAGTATTTCAACACCAAGCCTTATGCTTGTAATCCATCAATCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAGAAATCGGGATGATGTGCGCAGGAAAAAGAATGGAGGTAAAGAGCGAGAGGCTGTAACATCAAGAAGGCAAAAACAAGTCCATAAAGTTTTGCAGGACCCTAACAGTTTCAGTAAACCAGCTTTGAAAGAGGAAATGCAGAATATTTCTCAAAATACTGTTAGAGATGATGGTAAAGCACATATTGCAAAGGTTAAAGTAGGAGCTAGACACAAAGAGCAGCTACAGCCTTCACATCATGCAAAATCAGAGACTGCTCAAATGATGAATGGTTGTAATGGCTATAGTGTATACTCAGGACCAGCACCTGTCTCAGGATCTAGTGGTTTTACTTGGGCAAAAATGAGAAAACAAGATTCTTCTTCTGCATTATCAGATGGATCAAGAAGCAAAATCAGTGCACTGGATCCATCCTTTGCAAAAGGCACCTATGATTTAACAAAACAAGGGATAGAAGTTTCAGAAAGAAAACACAATTACAATGCATACCATTCAAATCATTACCTGGAATTTGATCCCACAGAAAAAACGGATGCTCTGATAAATGCTCAGTTCATTGATGTTTACACTGGGGCTACAGAATACATGGTGAGTCTGTGGATAAAAATGATGAATTGTCGCATTGGAATGAAAGTATGCGGCGATATGTTCATAAATCAAGGTTTGGAAGAGGTAAAGAAACTATTTTTTATCTATGGTGATGTTTACACCTACAAAATTTAG 2046 0.4125 MGCVNSKKGVAGASSSSPVEPHVVHSSSRKRSNGGSKRNIVVESSLAVSSSSKGHSGVVVLETQQQQRQGEKNQKPEEWKKGSLRGGINGSLSMKLGSHRFVEAEQKAAGWPPWLTSVAGEAIDGWVPLKTDSFEKLDKIGQGTYSSVFQAREVETGRMVALKKVRFDNLQAESIRFMAREIIILRTLDHPNIMKLEGIITSQLSNTIYLVFEYMEHDLAGLVSSPDIKFTESQIKCYMRQLLSGLEHCHLRGIMHRDIKVSNILVNNEGILKIADFGLANNICPNSKQPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSMGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWRKCKLPLATMFKPQIYYESSLRERCKGFPLTAVNLLETLLSIDSNKRGTASSALMSEYFNTKPYACNPSILPKYPPSKEMDARNRDDVRRKKNGGKEREAVTSRRQKQVHKVLQDPNSFSKPALKEEMQNISQNTVRDDGKAHIAKVKVGARHKEQLQPSHHAKSETAQMMNGCNGYSVYSGPAPVSGSSGFTWAKMRKQDSSSALSDGSRSKISALDPSFAKGTYDLTKQGIEVSERKHNYNAYHSNHYLEFDPTEKTDALINAQFIDVYTGATEYMVSLWIKMMNCRIGMKVCGDMFINQGLEEVKKLFFIYGDVYTYKI 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2596g00086 681 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
Gabi2596g00086 681 CDD STKc_CDK9_like 134 418 - -
Gabi2596g00086 681 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Gabi2596g00086 681 MobiDBLite consensus disorder prediction 9 70 - -
Gabi2596g00086 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Gabi2596g00086 681 FunFam probable serine/threonine-protein kinase At1g54610 121 216 - -
Gabi2596g00086 681 FunFam probable serine/threonine-protein kinase At1g54610 217 458 - -
Gabi2596g00086 681 SUPERFAMILY Protein kinase-like (PK-like) 129 423 IPR011009 -
Gabi2596g00086 681 MobiDBLite consensus disorder prediction 429 467 - -
Gabi2596g00086 681 MobiDBLite consensus disorder prediction 1 84 - -
Gabi2596g00086 681 MobiDBLite consensus disorder prediction 437 467 - -
Gabi2596g00086 681 SMART serkin_6 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2596g00086 681 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2596g00086 681 PANTHER CELL DIVISION PROTEIN KINASE 132 422 - -
Gabi2596g00086 681 Gene3D Transferase(Phosphotransferase) domain 1 217 458 - -
Gabi2596g00086 681 Pfam Protein kinase domain 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2596g00086 Gabi-Chr2596 867905 873710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2596g00086 126 473 Core Cell Cycle Gene Families AT5G10270 46.703 1.42e-105 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi2596g00086 Pkinase 6.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2596g00086 - - gmx:100781059 929.087