Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2596g00080 | ATGGGTTCCTATTCTAATAACGAGAAAGAGAACCATGCCATGAAAACACCCAATGACATTGATACCCTCTCTGCCATGGTGCTTGGTTCCAATGTGGTCTTTCCTGCAGCACTTAATGCTGCAATTGAACTCAAACTATTTGAGATCATTGCCAAGGAAAGCTCACTATATAATAGTGATGGATTCATGTCATCTTTTGAAATTGCTTCAAAGCTACCAAACCAACACTCAGACTTGCCAAATAGGCTTGACCGTGTGTTACGCTTGCTTGCTAGTTACTCTCTTCTTACTCTTTCCACTCGCACCATTGAGGATGTTACCACTCTCACAGTTTATGGTATCTCACCATCTGGTAAATATTTTGTTAATGATGAAAATGGTTATGGAAATAATGGTGATGGTTATTTGGCTTCATTCACATTATTTCTGTGTCACCGTGCTATGTTAGGTGTATGGCTGAATTTTAAGGAAGCAGTTATTAATCCTGAGATTGATGTATTCAAGAAAGTTAATGGAATGTCTAAGTTCGAGTACTTTGGGAAAGAACCAGAAATGAATAGTGTCTTCAACAAACCAATGGCTGATATATGCACAACCCATATGAAAAAAATACTTGAAATATACACAGGGTATGAGGGATTATCAACTTTGGTTGATGTAGGAGGTGGAATTGGACAAGGTCTCAATATGATCATCACCAAATACCCTTCAATTAAAGGGATTAATTATGACCTCCCTCAAGTGATTGAAAATGCACCACCCTTTCCGGGGATTGAGCATATTGGAGGAAATATGTTTGAAAGTGTTCCACAGGGTGATGCCATAATGCTAAAGGCTATAATCCATAATTGGTCCGATGAAAAATGCTTGCAACTTTTAAGCAATTGTCACAAGGCTTTGCCACCAAATGGGAAGGTCATTATCGGGGAGCTCATACTGCCAGAAGATCCAGAACCTAAAAATGAATATAAAATGATTTCAATTCTTGATAACATCATGTTTATTACTCCTGGTGGAAGGGAAAGAACTGAGAAACAATACAAGAGTTTGGGCAAGCGCTCTGGATTTTCTAGGTTTCAAGTTGTTTGTCGTGCTTTCTCTGCTTTGGGAGTGATGGAGTTTTACAAATAA | 1131 | 0.3846 | MGSYSNNEKENHAMKTPNDIDTLSAMVLGSNVVFPAALNAAIELKLFEIIAKESSLYNSDGFMSSFEIASKLPNQHSDLPNRLDRVLRLLASYSLLTLSTRTIEDVTTLTVYGISPSGKYFVNDENGYGNNGDGYLASFTLFLCHRAMLGVWLNFKEAVINPEIDVFKKVNGMSKFEYFGKEPEMNSVFNKPMADICTTHMKKILEIYTGYEGLSTLVDVGGGIGQGLNMIITKYPSIKGINYDLPQVIENAPPFPGIEHIGGNMFESVPQGDAIMLKAIIHNWSDEKCLQLLSNCHKALPPNGKVIIGELILPEDPEPKNEYKMISILDNIMFITPGGRERTEKQYKSLGKRSGFSRFQVVCRAFSALGVMEFYK | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2596g00080 | 376 | FunFam | Caffeic acid O-methyltransferase | 130 | 376 | - | - | |
| Gabi2596g00080 | 376 | FunFam | Caffeic acid 3-O-methyltransferase | 4 | 121 | - | - | |
| Gabi2596g00080 | 376 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 26 | 376 | IPR016461 | GO:0008168 | |
| Gabi2596g00080 | 376 | Pfam | Dimerisation domain | 37 | 91 | IPR012967 | GO:0046983 | |
| Gabi2596g00080 | 376 | Pfam | O-methyltransferase domain | 152 | 357 | IPR001077 | GO:0008171 | |
| Gabi2596g00080 | 376 | Gene3D | Vaccinia Virus protein VP39 | 129 | 376 | IPR029063 | - | |
| Gabi2596g00080 | 376 | PANTHER | O-METHYLTRANSFERASE | 25 | 366 | IPR016461 | GO:0008168 | |
| Gabi2596g00080 | 376 | Gene3D | - | 1 | 121 | IPR036388 | - | |
| Gabi2596g00080 | 376 | PIRSF | O-mtase | 3 | 376 | IPR016461 | GO:0008168 | |
| Gabi2596g00080 | 376 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 134 | 373 | IPR029063 | - | |
| Gabi2596g00080 | 376 | SUPERFAMILY | "Winged helix" DNA-binding domain | 24 | 125 | IPR036390 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2596g00080 | Gabi-Chr2596 | 831506 | 832998 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2596g00080 | 5 | 366 | Monolignol Biosynthesis Gene Families | AT5G54160 | 47.658 | 6.74e-113 | 332 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2596g00080 | - | - | gmx:100798295 | 559.681 |