Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2596g00060 | ATGGACTACACAACTTGGCCTGAATCACAGCAAAACCAAACCCCACTATCCTCTTACCCACCTTCTGTACCCTCATCGTATCCTCAACCATCATCTTTCACTACCCAGTATCCCTCTTACCCTCAAAACCCTAACCCTTCTTCATCTATCCCTCAATCTTCTCTTGTAACCCATGGTGGCACTCTTCTGGAACCAGGGCTCAACCCTCCTGGGGTTGATTCCTATGCCCCATTGAACTCCAATCCTAATATCATTACTCATCTGGGTCATGAAGGCCTTCCCAATTTCTTGTATGGTCACACTCACAGCCATGTGGTTGATTCGAGCTCGTTGGTGGCATCTTCTGGGTACTACTTGGATCCCAATACCCAGAATTGGGCTGCTAGGGAGGCTGTTAGGCAGTATGGTGCAAACCCTGTTAGCCATGGAGCTGGCATCTCTGTACCATCAGATGGCTCGGAACAACTGGCTTTTGCAAATCCTAACTCCACATTGTGGACAAATACGACAACTAAACCTCATGGCAATGGAATATGGAAGAAACACCTAAAGAAAGCTAAAACTAAGATTGTGCAATCTGCATATTGTGAAGTTTGCAAGATAGATTGCACCAGTAAGGATGTACTGGACCAGCATAAATTAGGAAAGAAGCACAAGAAGAACTTGGAGAAACTAAGAGAATCATTGAAACCAACTCAAGTTCATCCATCTGGGTCATCTAATCCTGTTATAGGACCACAAGTACATAATGACAAGAGCAAATCTGACAGTGGGCAGAAGAGTAAGAGGAAAACAGTTGAAACTCCAGAGGATTTGGAGAAAAAGAAGAAAAAGGTTCTTGAAGGGGGGGCAGCAGCTGAAGCAGTTAGAATATGTGCTATATGTAACGTCGTGTGTAATAGTGAGACGGTTTATAATTATCATCTTTCAGGGCAAAAGCATGCTGCCATGGTGAAGAAAGCATCTGACCATACACGATCCAATACCAGTTGA | 993 | 0.4411 | MDYTTWPESQQNQTPLSSYPPSVPSSYPQPSSFTTQYPSYPQNPNPSSSIPQSSLVTHGGTLLEPGLNPPGVDSYAPLNSNPNIITHLGHEGLPNFLYGHTHSHVVDSSSLVASSGYYLDPNTQNWAAREAVRQYGANPVSHGAGISVPSDGSEQLAFANPNSTLWTNTTTKPHGNGIWKKHLKKAKTKIVQSAYCEVCKIDCTSKDVLDQHKLGKKHKKNLEKLRESLKPTQVHPSGSSNPVIGPQVHNDKSKSDSGQKSKRKTVETPEDLEKKKKKVLEGGAAAEAVRICAICNVVCNSETVYNYHLSGQKHAAMVKKASDHTRSNTS | 330 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2596g00060 | 330 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Gabi2596g00060 | 330 | MobiDBLite | consensus disorder prediction | 232 | 252 | - | - | |
| Gabi2596g00060 | 330 | SMART | ZnF_U1_5 | 287 | 321 | IPR003604 | GO:0003676|GO:0008270 | |
| Gabi2596g00060 | 330 | SMART | ZnF_U1_5 | 191 | 225 | IPR003604 | GO:0003676|GO:0008270 | |
| Gabi2596g00060 | 330 | SMART | c2h2final6 | 194 | 218 | IPR013087 | - | |
| Gabi2596g00060 | 330 | SMART | c2h2final6 | 290 | 314 | IPR013087 | - | |
| Gabi2596g00060 | 330 | SUPERFAMILY | beta-beta-alpha zinc fingers | 190 | 225 | IPR036236 | - | |
| Gabi2596g00060 | 330 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
| Gabi2596g00060 | 330 | Gene3D | Classic Zinc Finger | 251 | 322 | - | - | |
| Gabi2596g00060 | 330 | Gene3D | Classic Zinc Finger | 182 | 229 | - | - | |
| Gabi2596g00060 | 330 | Pfam | Zinc-finger of C2H2 type | 195 | 218 | - | - | |
| Gabi2596g00060 | 330 | Pfam | Zinc-finger of C2H2 type | 292 | 314 | - | - | |
| Gabi2596g00060 | 330 | PANTHER | ZINC FINGER PROTEIN 385B-LIKE | 1 | 325 | - | - | |
| Gabi2596g00060 | 330 | MobiDBLite | consensus disorder prediction | 28 | 59 | - | - | |
| Gabi2596g00060 | 330 | MobiDBLite | consensus disorder prediction | 227 | 273 | - | - | |
| Gabi2596g00060 | 330 | MobiDBLite | consensus disorder prediction | 253 | 273 | - | - | |
| Gabi2596g00060 | 330 | SUPERFAMILY | beta-beta-alpha zinc fingers | 290 | 320 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2596g00060 | Gabi-Chr2596 | 662399 | 664725 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2596g00060 | 180 | 324 | C2H2 Transcription Factor Family | AT5G61190 | 27.607 | 2.28e-08 | 53.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2596g00060 | - | - | gmx:100814580 | 327.405 |