Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2596g00055 ATGGCTAAGTCTCACTGTTTGGTTCCTTTGGCCTTTTTCGTGGCTTTCTTCGTACAAGCAATGTCAGCTGGCACTGACAGTAATTGGTATGATGCTCATGCAACCTTCTATGGTGACATGAAGGGTGGAGATACAATGCAGGGTGCTTGTGGTTATGGTAATCTCTTCAAGCAAGGCTATGGACTTGAGACTGCAGCACTAAGCACAGCTCTATTCAACAATGGACTCACATGTGGTGCATGTTTTGAGATAAAGTGTGTCAATGATCCCCAATGGTGCAAAAAGAATGCAGGCTCAATAAGAATTACCGCAACAAATTTTTGTCCTCCCAATTACTCCAAACCTGATGGCAATTGGTGCAACCCTCCACTAAAACACTTTGACTTGTCCATGAAAATGTTCACCACCATTGCTTTTTACAAAGCAGGGATCATCCCTGTTCAATATCGTCGTGTTCAATGCACCAAAAATGGTGGTGTCAAGTTTGAAATCAGAGGGAACCCTTATTGGTTGCTTGTTTTGGTGTACAATGTTGGCAATGCTGGTGATGTTTCTAGTGTGAGCATCAAAGGGTCTAAGTCTAACACTGGATGGCTTCCTATGTCACACAATTGGGGACAACATTGGGTTACCGGGACTAATATTGTAGGACAAGCCTTGTCATTTAAGGTGACCACAAGTGATGGTAAAATGTTGGAGTTTGATGATGTTGCCCCTACCAATTGGCAATTCGGACAAACCTACGAAGCCAATAACAATTTTCAGATGTGTTGA 774 0.4276 MAKSHCLVPLAFFVAFFVQAMSAGTDSNWYDAHATFYGDMKGGDTMQGACGYGNLFKQGYGLETAALSTALFNNGLTCGACFEIKCVNDPQWCKKNAGSIRITATNFCPPNYSKPDGNWCNPPLKHFDLSMKMFTTIAFYKAGIIPVQYRRVQCTKNGGVKFEIRGNPYWLLVLVYNVGNAGDVSSVSIKGSKSNTGWLPMSHNWGQHWVTGTNIVGQALSFKVTTSDGKMLEFDDVAPTNWQFGQTYEANNNFQMC 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2596g00055 257 PANTHER EXPANSIN-A15 11 252 IPR002963 GO:0009664
Gabi2596g00055 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Gabi2596g00055 257 SMART dpbb_1 64 149 IPR007112 -
Gabi2596g00055 257 Gene3D - 156 255 IPR036749 -
Gabi2596g00055 257 CDD DPBB_EXPA_N 29 154 - -
Gabi2596g00055 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 250 IPR007117 -
Gabi2596g00055 257 Gene3D - 16 155 IPR036908 -
Gabi2596g00055 257 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Gabi2596g00055 257 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Gabi2596g00055 257 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Gabi2596g00055 257 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Gabi2596g00055 257 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Gabi2596g00055 257 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Gabi2596g00055 257 SUPERFAMILY PHL pollen allergen 156 249 IPR036749 -
Gabi2596g00055 257 Pfam Expansin C-terminal domain 160 239 IPR007117 -
Gabi2596g00055 257 Pfam Lytic transglycolase 64 149 IPR009009 -
Gabi2596g00055 257 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Gabi2596g00055 257 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Gabi2596g00055 257 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Gabi2596g00055 257 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Gabi2596g00055 257 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Gabi2596g00055 257 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Gabi2596g00055 257 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Gabi2596g00055 257 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Gabi2596g00055 257 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Gabi2596g00055 257 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2596g00055 Gabi-Chr2596 626722 627663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2596g00055 24 254 Expansin Gene Family AT5G39280 65.801 6.72e-117 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2596g00055 - - gsj:114422475 406.757