Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2596g00039 ATGGCGTTCATCGGTAAAATTGGAAAGCTACTCAAGAATTCTGCTGTCAAGCACATCAATCAAGATTTTTCTTTGTCTAATCCTTCGGTTTTCCAAGCGATTAGATCCATGTCATCTGCAAAACTTTTTGTTGGAGGTATTTCATATAGCACTGATGATATGAGTCTGCGAGAAGCTTTTGCTCGCTATGGAGAAGTAATTGATGCAAAGGTTATTATGGATCGTGACACTGGCAGGTCCAGAGGTTTTGGCTTCATAACTTTTGCAACAAGTGAGGATGCGTCTTCTGCTGTTCAAGGCATGGATGGCCAGGATCTTCATGGTCGAAGGGTACGGGTGAATTATGCCACTGAAAGGTCACGTCCAGGGTTTGGTGGTGGCTATGGAGGTGGTGGCGGAAGTGGCTATGGAGGTGGTGGTGGCTATGGTGGGGGTGGTGGCTATGGCGGCGGAGGCTATGGAGGCAGTGGCGGCTATGGTGGTAGTAATTATGGAGGTAACAACAACAATAGGGGTGAAAGTTATGGAAGTAGTGGTTATGGTGTTACAGGCAACTATGGGGATGGCAATACTGGAACAAATTACACTAGTGGTGGTGCTAGTAATTACCAATTAAATGAAAATTCTGGTGGAGATCTAGGCTTTGGCTCTGACAGCGGAGAACTCGGCCGCAAGTCTGGTTTGGGATATGATGGTCAATTTGGAAGCAACCAAAATGACACAAGAGTCACAGATGATGGAGAATCCATTGAGCCACTTGAAGACAGTCATGTGAGAGAGAACAATGATGAGCCTGATGACTACGCTCAAACCCGGGGGTGA 822 0.4635 MAFIGKIGKLLKNSAVKHINQDFSLSNPSVFQAIRSMSSAKLFVGGISYSTDDMSLREAFARYGEVIDAKVIMDRDTGRSRGFGFITFATSEDASSAVQGMDGQDLHGRRVRVNYATERSRPGFGGGYGGGGGSGYGGGGGYGGGGGYGGGGYGGSGGYGGSNYGGNNNNRGESYGSSGYGVTGNYGDGNTGTNYTSGGASNYQLNENSGGDLGFGSDSGELGRKSGLGYDGQFGSNQNDTRVTDDGESIEPLEDSHVRENNDEPDDYAQTRG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2596g00039 273 SUPERFAMILY RNA-binding domain, RBD 25 150 IPR035979 GO:0003676
Gabi2596g00039 273 SMART rrm1_1 41 114 IPR000504 GO:0003723
Gabi2596g00039 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Gabi2596g00039 273 MobiDBLite consensus disorder prediction 209 273 - -
Gabi2596g00039 273 MobiDBLite consensus disorder prediction 244 273 - -
Gabi2596g00039 273 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 203 - -
Gabi2596g00039 273 Gene3D - 13 137 IPR012677 -
Gabi2596g00039 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Gabi2596g00039 273 CDD RRM2_NsCP33_like 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2596g00039 Gabi-Chr2596 483246 486585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2596g00039 33 126 C2H2 Transcription Factor Family AT2G19380 36.170 2.61e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2596g00039 K12741 - gmx:100818300 252.677