Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2596g00038 ATGGATGATAATATTGATAAACGCTTAGTCCTTAAAACCATAGCCACCATGTTTTTGTTCATCTTAACCAATTTGCCACAGTCCCATTCTCAAGAAGAAGACACCAAATACACCAATTGTAGCAGGCTGCCATACAACTGTGGATACATGTCCAACATCTTCTACCCTTTTTGGGGACACAACAGACCCCAATATTGTGGCGGCGGCGACCAATTAGGTTTCAAACTTGAGTGTCAGAATGATAGTACCACCATTCTAAATGGCTTACAAAATTTCCAAGTTTTGCATATCGACACAACAGCTTACACCATTACAATGAAGCAAAGGGTCGATGATGTTTGTTCTCGGCAACTTAACGACACTTACTTGGACCTGGACCCCACCCTCTTCGCGTACCATGGAACTGTGTACAACATCACCATTTTCTACAACTGTTCCTCTTCTTCAGATTCCTCTGCAGTAGATAGATACAACTTCACGTGCGGAAATAATGAGAATGGTACCTATCGTGTGGGTGATAAAGATGACGTGTTGAAAGAATTCCCAGAGCTTCAGAATTGCAAACGATATATCCAAGTGCCGATTGAGGTTCCTCTGGATCCTTATGGCGATAGATTTGATGCTCTGAATAAGGCTTTGGATGGTGGGTTTGAGGTGAACTATACTGTTCCACACGATCACGAATGCATACCATGTTTGGATAGTAAAGGAGCTTGTGGAGTCAATTTAACTTCTCATCAATTTACCTGTTATTGCCAACATGGATCTGATGCTATTCATTGCTATGGTGGAGTTTCTAATAGTATTATTGGCGGAGTGATAGCAGGATTGTTGATATGTATCACTATTTTTTATTTCAGATGCAAGTCATCAACATGGAATGAAAAATTTTGTTTGACCACAAAAAGTAACCAAGATATTGAAGCATTCTTAAAAAATCATGGAGCCCTAACTTTAAAAAGATACAAATTCTCAAATGTCAAGAAAATGACCAACTCCTTCAAACATAAACTAGGACAAGGTGGTTTTGGTTCTGTATACAAAGGACATCTATTTAGTGGTTGCCCTGTGGCTGTAAAGATATTGAGGTCATCCAAAGGAAACAATGAAGACTTCATCAATGAGGTTGCCAGTATCAGTAAAACTTCTCACGTCAATGTTGTCACCCTTCTTGGATTTTGTTTGGAAGGCCGCAAGAAAGCTCTCATCTATGAGTTTATGTCCAATGGTTCCCTTGAAAAGTTTATTTACAAAGAGGGACACGAAACCGTTGCATCTTTAAGCTGGGAGAATTTGTATCAAATTGCCATAGGAATTGCTCGAGGGTTGGAGTACTTGCATAGGGGATGCAATACTAGAATTTTGCATTTTGACATAAAACCACATAATATCCTCTTGGATGAGAATTTCTGCCCCAAGATATCAGATTTTGGGCTAGCAAAGCTCTGTCCCATGAGAGAGAGCATAATTTCCATGTCAGAAGCTAGAGGGACAATTGGGTATGGAGCTCCAGAAATGTGGAATAGACATTTTGGAGGTGTTTCTCATAAGTCTGATGTTTACAGCTATGGAATGATGTTGCTAGAAATGGTGGGAGGGAGGAAGAACATTCATGCTGAAACCAGTCACACTAGTGAGTTATACTTCCCACATTGGGTATACAACAGGCTTGAGCAAGGCAGTGATTTGAGACCAGATGAGGTGATTACCACAGAAGAAAATGAGATAACAAAGAGATTGACCGTGGTTGGTTTATGGTGCACTCAAACGTTTCCAAATGATAGACCTACAATTAGTAGAGTGATAGATATGTTGGAAGGCAGCATGAATTCCCTGGAAATTCCCCCAAAACCTATGCTTTCCTCTCCTACTAGATTAGTATCTGAATCCTTCACCTATTGA 1902 0.4006 MDDNIDKRLVLKTIATMFLFILTNLPQSHSQEEDTKYTNCSRLPYNCGYMSNIFYPFWGHNRPQYCGGGDQLGFKLECQNDSTTILNGLQNFQVLHIDTTAYTITMKQRVDDVCSRQLNDTYLDLDPTLFAYHGTVYNITIFYNCSSSSDSSAVDRYNFTCGNNENGTYRVGDKDDVLKEFPELQNCKRYIQVPIEVPLDPYGDRFDALNKALDGGFEVNYTVPHDHECIPCLDSKGACGVNLTSHQFTCYCQHGSDAIHCYGGVSNSIIGGVIAGLLICITIFYFRCKSSTWNEKFCLTTKSNQDIEAFLKNHGALTLKRYKFSNVKKMTNSFKHKLGQGGFGSVYKGHLFSGCPVAVKILRSSKGNNEDFINEVASISKTSHVNVVTLLGFCLEGRKKALIYEFMSNGSLEKFIYKEGHETVASLSWENLYQIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPMRESIISMSEARGTIGYGAPEMWNRHFGGVSHKSDVYSYGMMLLEMVGGRKNIHAETSHTSELYFPHWVYNRLEQGSDLRPDEVITTEENEITKRLTVVGLWCTQTFPNDRPTISRVIDMLEGSMNSLEIPPKPMLSSPTRLVSESFTY 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2596g00038 633 Pfam Wall-associated receptor kinase C-terminal 178 254 IPR032872 -
Gabi2596g00038 633 SUPERFAMILY Protein kinase-like (PK-like) 318 606 IPR011009 -
Gabi2596g00038 633 FunFam serine/threonine-protein kinase PBS1-like 300 406 - -
Gabi2596g00038 633 Pfam Wall-associated receptor kinase galacturonan-binding 40 107 IPR025287 GO:0030247
Gabi2596g00038 633 Pfam Protein tyrosine and serine/threonine kinase 334 604 IPR001245 GO:0004672|GO:0006468
Gabi2596g00038 633 Gene3D Phosphorylase Kinase; domain 1 305 406 - -
Gabi2596g00038 633 SMART serkin_6 332 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2596g00038 633 PANTHER RUST RESISTANCE KINASE LR10-RELATED 302 622 IPR045874 GO:0004672
Gabi2596g00038 633 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Gabi2596g00038 633 Gene3D Transferase(Phosphotransferase) domain 1 407 620 - -
Gabi2596g00038 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Gabi2596g00038 633 ProSiteProfiles Protein kinase domain profile. 332 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2596g00038 633 FunFam PR5-like receptor kinase 407 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2596g00038 Gabi-Chr2596 464545 468871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2596g00038 34 620 Receptor kinase-like Gene Family AT5G38260 39.967 2.19e-142 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi2596g00038 PK_Tyr_Ser-Thr 6.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2596g00038 - - gmx:100792936 732.635