Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2596g00036 ATGGTCTTACTTAGAGCAAGTTATTATGGCACAGTTAAAGCAGAAGAAGGAAGAGAAGAAGCTGATAGGATTTTGGAACTCCCAGGGCAACCAAAGGTGTCGTTTCAGCAGTTCTCTGGCTATGTTACTGTCAATAAGGTTGATGGTAGAGCACTCTTTTACTGGCTCACTGAAGCTTCCCAAAACCCTCTCACCAAACCCCTTGTCATTTGGCTCAATGGAGGTCCAGGTTGTTCATCAGTGGCATATGGAGCATCCGAAGAGATTGGGCCATTTAGAATAAATAAAACAGCTTCTGGGCTATACATTAACAAGTTCTCATGGAACACAGTGACCAATCTCTTATTCTTGGAAGCTCCGGCCGGAGTTGGCTTCTCCTACACCAACCGCTCCTCCGACCTCCTTGACACTGGCGACCGCCGCACTGCCGAAGACTCTCTGGAATTTGTAATCCAATGGCTAGAACGATTCCCACGTTATAAGAATCGGGAAATTTATATCACTGGAGAGAGCTATGCAGGCCATTATGTCCCTCAATTAGCTAGGCAAATCTTGACCTATAACTCAAAAACCAAGTACCCCATTAATCTCAAAGGAATAATGGTTGGAAATGCAGTCACAGACAACTATTATGATAACTTGGGCACAGTGACTTATTGGTGGAGCCATGCAATGATCTCCGACCAGACTTACCGGCAACTCATTAACACTTGTGATTTTCACCGGCAGAAGGAATCCGATGAGTGTGAGTCTCTATATAGCTACGCCATGGATCAAGAATTTGGCAACATTGATCAATACAACATCTATGCACCTCCATGCAACAATTCAGATGGCAGCTCAAAATTTATTTATTCTCAGGCTTTCAGAAAATGGTCTGGTTATGATCCATGTACGGAAAAGTATGCAGAGATTTACTACAATAGGCCAGATGTTCAGAAAGCACTCCATGCTAACACAACCGGCATTTCTTATAAGTGGACTGCTTGCAGTGAGATTTTGAATCGAAACTGGAATGATACAGATGTATCTGTTCTTCCAATTTATAGAGAGTTGATAGCTCATGGAACAAGAGTTTGGGTGTTCAGTGGGGATGTGGACTCAGTGGTGCCGGTTACAGCTACTAGATATGCCCTTGCACAGCTTAAGTTGGCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAAGTTGGAGGTTGGACAGAGGTGTATGAAGGGTTAACATTTGCCACGGTGAGAGGAGCAGGCCATGAAGTCCCACTATTCAAGCCCAGAGCAGCTCTTCAGTTATTCAAATCATTTCTTGCAGGAAAGCCTCTCCCTAAATCCTAA 1338 0.4365 MVLLRASYYGTVKAEEGREEADRILELPGQPKVSFQQFSGYVTVNKVDGRALFYWLTEASQNPLTKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYINKFSWNTVTNLLFLEAPAGVGFSYTNRSSDLLDTGDRRTAEDSLEFVIQWLERFPRYKNREIYITGESYAGHYVPQLARQILTYNSKTKYPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLINTCDFHRQKESDECESLYSYAMDQEFGNIDQYNIYAPPCNNSDGSSKFIYSQAFRKWSGYDPCTEKYAEIYYNRPDVQKALHANTTGISYKWTACSEILNRNWNDTDVSVLPIYRELIAHGTRVWVFSGDVDSVVPVTATRYALAQLKLATKIPWYPWYVKNQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFKSFLAGKPLPKS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2596g00036 445 SUPERFAMILY alpha/beta-Hydrolases 26 443 IPR029058 -
Gabi2596g00036 445 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 178 IPR001563 GO:0004185|GO:0006508
Gabi2596g00036 445 PRINTS Carboxypeptidase C serine protease (S10) family signature 409 422 IPR001563 GO:0004185|GO:0006508
Gabi2596g00036 445 PRINTS Carboxypeptidase C serine protease (S10) family signature 104 116 IPR001563 GO:0004185|GO:0006508
Gabi2596g00036 445 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 127 IPR001563 GO:0004185|GO:0006508
Gabi2596g00036 445 ProSitePatterns Serine carboxypeptidases, serine active site. 167 174 IPR018202 GO:0004185
Gabi2596g00036 445 Gene3D - 298 335 - -
Gabi2596g00036 445 Gene3D - 345 439 - -
Gabi2596g00036 445 FunFam Carboxypeptidase 18 276 - -
Gabi2596g00036 445 Pfam Serine carboxypeptidase 29 438 IPR001563 GO:0004185|GO:0006508
Gabi2596g00036 445 ProSitePatterns Serine carboxypeptidases, histidine active site. 409 426 IPR033124 GO:0004185
Gabi2596g00036 445 FunFam Carboxypeptidase 345 439 - -
Gabi2596g00036 445 FunFam Carboxypeptidase 294 442 - -
Gabi2596g00036 445 Gene3D alpha/beta hydrolase 18 276 IPR029058 -
Gabi2596g00036 445 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 426 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2596g00036 Gabi-Chr2596 442142 446445 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2596g00036 303 442 Calmodulin-binding Proteins AT2G22960 31.206 1.93e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2596g00036 K16297 - gmx:100807680 836.639