Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2596g00035 ATGGTCTTACTTAGAGCAAGTTATTATGGCACAGTTAAAGCAGAAGAAGGAAGAGAAGAAGCTGATAGGATTTTGGAACTCCCAGGGCAACCAAAGGTGTCGTTTCAGCAGTTCTCTGGCTATGTTACTGTCAATAAGGTTGATGGTAGAGCACTCTTTTACTGGCTCACTGAAGCTTCCCAAAACCCTCTCACCAAACCCCTTGTCATTTGGCTCAATGGAGGTCCAGGTTGTTCATCAGTGGCATATGGAGCATCCGAAGAGATTGGGCCATTTAGAATAAATAAAACAGCTTCTGGGCTATACATTAACAAGTTCTCATGGAACACAGTGACCAATCTCTTATTCTTGGAAGCTCCGGCCGGAGTTGGCTTCTCCTACACCAACCGCTCCTCCGACCTCCTTGACACTGGCGACCGCCGCACTGCCGAAGACTCTCTGGAATTTGTAATCCAATGGCTAGAACGATTCCCACGTTATAAGAATCGGGAAATTTATATCACTGGAGAGAGCTATGCAGGCCATTATGTCCCTCAATTAGCTAGGCAAATCTTGACCTATAACTCAAAAACCAAGTACCCCATTAATCTCAAAGGAATAATGGTTGGAAATGCAGTCACAGACAACTATTATGATAACTTGGGCACAGTGACTTATTGGTGGAGCCATGCAATGATCTCCGACCAGACTTACCGGCAACTCATTAACACTTGTGATTTTCACCGGCAGAAGGAATCCGATGAGTGTGAGTCTCTATATAGCTACGCCATGGATCAAGAATTTGGCAACATTGATCAATACAACATCTATGCACCTCCATGCAACAATTCAGATGGCAGCTCCGCCACGCGCCACACTATTCGAAAATGGTCTGGTTATGATCCATGTACGGAAAAGTATGCAGAGATTTACTACAATAGGCCAGATGTTCAGAAAGCACTCCATGCTAACACAACCGGCATTTCTTATAAGTGGACTGCTTGCAGTGAGATTTTGAATCGAAACTGGAATGATACAGATGTATCTGTTCTTCCAATTTATAGAGAGTTGATAGCTCATGGAACAAGAGTTTGGGTGTTCAGTGGGGATGTGGACTCAGTGGTGCCGGTTACAGCTACTAGATATGCCCTTGCACAGCTTAAGTTGGCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAAGTTGGAGGTTGGACAGAGGTGTATGAAGGGTTAACATTTGCCACGGTGAGAGGAGCAGGCCATGAAGTCCCACTATTCAAGCCCAGAGCAGCTCTTCAGTTATTCAAATCATTTCTTGCAGGAAAGCCTCTCCCTAAATCCTAA 1332 0.4437 MVLLRASYYGTVKAEEGREEADRILELPGQPKVSFQQFSGYVTVNKVDGRALFYWLTEASQNPLTKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYINKFSWNTVTNLLFLEAPAGVGFSYTNRSSDLLDTGDRRTAEDSLEFVIQWLERFPRYKNREIYITGESYAGHYVPQLARQILTYNSKTKYPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLINTCDFHRQKESDECESLYSYAMDQEFGNIDQYNIYAPPCNNSDGSSATRHTIRKWSGYDPCTEKYAEIYYNRPDVQKALHANTTGISYKWTACSEILNRNWNDTDVSVLPIYRELIAHGTRVWVFSGDVDSVVPVTATRYALAQLKLATKIPWYPWYVKNQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFKSFLAGKPLPKS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2596g00035 443 ProSitePatterns Serine carboxypeptidases, histidine active site. 407 424 IPR033124 GO:0004185
Gabi2596g00035 443 Pfam Serine carboxypeptidase 29 436 IPR001563 GO:0004185|GO:0006508
Gabi2596g00035 443 SUPERFAMILY alpha/beta-Hydrolases 26 441 IPR029058 -
Gabi2596g00035 443 Gene3D alpha/beta hydrolase 18 276 IPR029058 -
Gabi2596g00035 443 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 424 IPR001563 GO:0004185|GO:0006508
Gabi2596g00035 443 FunFam Carboxypeptidase 343 437 - -
Gabi2596g00035 443 ProSitePatterns Serine carboxypeptidases, serine active site. 167 174 IPR018202 GO:0004185
Gabi2596g00035 443 Gene3D - 296 333 - -
Gabi2596g00035 443 FunFam Carboxypeptidase 292 440 - -
Gabi2596g00035 443 FunFam Carboxypeptidase 18 276 - -
Gabi2596g00035 443 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 178 IPR001563 GO:0004185|GO:0006508
Gabi2596g00035 443 PRINTS Carboxypeptidase C serine protease (S10) family signature 104 116 IPR001563 GO:0004185|GO:0006508
Gabi2596g00035 443 PRINTS Carboxypeptidase C serine protease (S10) family signature 407 420 IPR001563 GO:0004185|GO:0006508
Gabi2596g00035 443 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 127 IPR001563 GO:0004185|GO:0006508
Gabi2596g00035 443 Gene3D - 343 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2596g00035 Gabi-Chr2596 442142 446445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2596g00035 301 440 Calmodulin-binding Proteins AT2G22960 31.206 1.95e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2596g00035 K16297 - gmx:100807680 839.336