Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2596g00034 ATGGAGCAAAGACAGATCTTTGTTCATGCGGTGATTTTCTTGTTTATGGTCTTACTTAGAGCAAGTTATTATGGCACAGTTAAAGCAGAAGAAGGAAGAGAAGAAGCTGATAGGATTTTGGAACTCCCAGGGCAACCAAAGGTGTCGTTTCAGCAGTTCTCTGGCTATGTTACTGTCAATAAGGTTGATGGTAGAGCACTCTTTTACTGGCTCACTGAAGCTTCCCAAAACCCTCTCACCAAACCCCTTGTCATTTGGCTCAATGGAGGTCCAGGTTGTTCATCAGTGGCATATGGAGCATCCGAAGAGATTGGGCCATTTAGAATAAATAAAACAGCTTCTGGGCTATACATTAACAAGTTCTCATGGAACACAGTGACCAATCTCTTATTCTTGGAAGCTCCGGCCGGAGTTGGCTTCTCCTACACCAACCGCTCCTCCGACCTCCTTGACACTGGCGACCGCCGCACTGCCGAAGACTCTCTGGAATTTGTAATCCAATGGCTAGAACGATTCCCACGTTATAAGAATCGGGAAATTTATATCACTGGAGAGAGCTATGCAGGCCATTATGTCCCTCAATTAGCTAGGCAAATCTTGACCTATAACTCAAAAACCAAGTACCCCATTAATCTCAAAGGAATAATGGTTGGAAATGCAGTCACAGACAACTATTATGATAACTTGGGCACAGTGACTTATTGGTGGAGCCATGCAATGATCTCCGACCAGACTTACCGGCAACTCATTAACACTTGTGATTTTCACCGGCAGAAGGAATCCGATGAGTGTGAGTCTCTATATAGCTACGCCATGGATCAAGAATTTGGCAACATTGATCAATACAACATCTATGCACCTCCATGCAACAATTCAGATGGCAGCTCCGCCACGCGCCACACTATTCGGTTACCTCACCGTCCCCATACGGCTTTCAGAAAATGGTCTGGTTATGATCCATGTACGGAAAAGTATGCAGAGATTTACTACAATAGGCCAGATGTTCAGAAAGCACTCCATGCTAACACAACCGGCATTTCTTATAAGTGGACTGCTTGCAGTGAGATTTTGAATCGAAACTGGAATGATACAGATGTATCTGTTCTTCCAATTTATAGAGAGTTGATAGCTCATGGAACAAGAGTTTGGGTGTTCAGTGGGGATGTGGACTCAGTGGTGCCGGTTACAGCTACTAGATATGCCCTTGCACAGCTTAAGTTGGCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAAGTTGGAGGTTGGACAGAGGTGTATGAAGGGTTAACATTTGCCACGGTGAGAGGAGCAGGCCATGAAGTCCCACTATTCAAGCCCAGAGCAGCTCTTCAGTTATTCAAATCATTTCTTGCAGGAAAGCCTCTCCCTAAATCCTAA 1407 0.4442 MEQRQIFVHAVIFLFMVLLRASYYGTVKAEEGREEADRILELPGQPKVSFQQFSGYVTVNKVDGRALFYWLTEASQNPLTKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYINKFSWNTVTNLLFLEAPAGVGFSYTNRSSDLLDTGDRRTAEDSLEFVIQWLERFPRYKNREIYITGESYAGHYVPQLARQILTYNSKTKYPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLINTCDFHRQKESDECESLYSYAMDQEFGNIDQYNIYAPPCNNSDGSSATRHTIRLPHRPHTAFRKWSGYDPCTEKYAEIYYNRPDVQKALHANTTGISYKWTACSEILNRNWNDTDVSVLPIYRELIAHGTRVWVFSGDVDSVVPVTATRYALAQLKLATKIPWYPWYVKNQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFKSFLAGKPLPKS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2596g00034 468 ProSitePatterns Serine carboxypeptidases, serine active site. 182 189 IPR018202 GO:0004185
Gabi2596g00034 468 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 40 449 IPR001563 GO:0004185|GO:0006508
Gabi2596g00034 468 SUPERFAMILY alpha/beta-Hydrolases 41 466 IPR029058 -
Gabi2596g00034 468 Gene3D - 321 358 - -
Gabi2596g00034 468 ProSitePatterns Serine carboxypeptidases, histidine active site. 432 449 IPR033124 GO:0004185
Gabi2596g00034 468 FunFam Carboxypeptidase 33 291 - -
Gabi2596g00034 468 Gene3D - 368 462 - -
Gabi2596g00034 468 Gene3D alpha/beta hydrolase 33 291 IPR029058 -
Gabi2596g00034 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Gabi2596g00034 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185|GO:0006508
Gabi2596g00034 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 432 445 IPR001563 GO:0004185|GO:0006508
Gabi2596g00034 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Gabi2596g00034 468 FunFam Carboxypeptidase 317 465 - -
Gabi2596g00034 468 FunFam Carboxypeptidase 368 462 - -
Gabi2596g00034 468 Pfam Serine carboxypeptidase 44 461 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2596g00034 Gabi-Chr2596 442126 446445 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2596g00034 326 465 Calmodulin-binding Proteins AT2G22960 31.206 1.67e-16 75.9