Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2596g00013 ATGCTTCTCAAATGTTTGGGTTTCTGCCACTCAAAGGATACAAGTGCATCTAAGGGACAGTATCCAACAGTGATAGAAGAGCTATGCCATCATTTTTCCCCGGCTGATCTTAGGAAATCAACCAACAACTTTGATGAAAACCAACTAATTGGACGTGGAGGCTTTGGTAGTGTATATAAAGGTTGTCTCAAACATAATGGTGTTAGTGATTATACAGTCGCATTAAAGCGATCGTACCGGAATAACTATGGAGAGTTCGTGAACTATGGAGAGTTCAAGAACGAAATAGAGTTGCTTTGCCAGCTTCGTCATGCTAATTTGGTGTCTCTTATAGGATTCTGCAACCTCAAACATGAGAAGATTATTGTGTACGACTACATACCCAATGGAACTTTCCATGATCATCTACACGATAGGGACAGGGACACACTCTCATGGAAGAAAAGGCTTGAGATATGCATAGGAGCAGCATGTGGGGTGCACTACCTTCACACAGGAGCCAAGCGCACGATAATTCACCTTGACGTAAAGCCTAGTAACATTCTTTTGGATAGCAATATGGTTCCCAAACTCACAGATTTCGGGCTTTCCTTACAGGGACAACGTTTCATGTCGAAGCCAAAACCAATTGAAGTAGACCGCATTTGTGGTACTTTCGGTTTCATGGCCCCTGAGTATACCATGTACGGTACCGTCACAGATAAATGTGATGTTTACTCATTTGGTAGGCTTCTACTAGAAGTTGTGTTGGAAAAGCCAATATCCTCAATACAGTCGTCCAAACCTGCTTGGGAGAATATTGATCCGAATCTCAAAGGGAATATTGCACCAGAGTGTTGGGAAGTATTTATGGATATCACGGAAAGATGCTTGAAGGAGGAAGCAGATGAGCGACCAACAATGGGTGAAGTAGAGGTGCAACTTGAGCTTGCTCTATCATTGCAGGAAGAAGCAGATAGCACAACTACCAATGGTAAATACACCTTATTGTCCAACACCATTATTAAGCTGGGACCGGAATTTGAGGACAGTGTGATATAG 1041 0.4256 MLLKCLGFCHSKDTSASKGQYPTVIEELCHHFSPADLRKSTNNFDENQLIGRGGFGSVYKGCLKHNGVSDYTVALKRSYRNNYGEFVNYGEFKNEIELLCQLRHANLVSLIGFCNLKHEKIIVYDYIPNGTFHDHLHDRDRDTLSWKKRLEICIGAACGVHYLHTGAKRTIIHLDVKPSNILLDSNMVPKLTDFGLSLQGQRFMSKPKPIEVDRICGTFGFMAPEYTMYGTVTDKCDVYSFGRLLLEVVLEKPISSIQSSKPAWENIDPNLKGNIAPECWEVFMDITERCLKEEADERPTMGEVEVQLELALSLQEEADSTTTNGKYTLLSNTIIKLGPEFEDSVI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2596g00013 346 SMART serkin_6 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2596g00013 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Gabi2596g00013 346 Gene3D Phosphorylase Kinase; domain 1 7 126 - -
Gabi2596g00013 346 FunFam Receptor-like protein kinase ANXUR2 127 330 - -
Gabi2596g00013 346 ProSitePatterns Protein kinases ATP-binding region signature. 50 76 IPR017441 GO:0005524
Gabi2596g00013 346 Gene3D Transferase(Phosphotransferase) domain 1 127 333 - -
Gabi2596g00013 346 Pfam Protein tyrosine and serine/threonine kinase 47 307 IPR001245 GO:0004672|GO:0006468
Gabi2596g00013 346 FunFam Receptor-like protein kinase ANXUR2 7 126 - -
Gabi2596g00013 346 ProSiteProfiles Protein kinase domain profile. 44 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2596g00013 346 PANTHER OS07G0166700 PROTEIN 28 315 IPR045272 GO:0004714|GO:0006468
Gabi2596g00013 346 SUPERFAMILY Protein kinase-like (PK-like) 20 312 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2596g00013 Gabi-Chr2596 80424 86533 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2596g00013 3 326 Receptor kinase-like Gene Family AT3G51550 42.442 7.75e-77 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gabi2596g00013 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2596g00013 - - gmx:100305395 398.282