Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2596g00011 ATGCTTCTCAAATGTTTGGGTTTCTGCCACTCAAAGGATACAAGTGCATCTAAGGGACAGTATCCAACAGTGATAGAAGAGCTATGCCATCATTTTTCCCCGGCTGATCTTAGGAAATCAACCAACAACTTTGATGAAAACCAACTAATTGGACGTGGAGGCTTTGGTAGTGTATATAAAGGTTGTCTCAAACATAATGGTGTTAGTGATTATACAGTCGCATTAAAGCGATCGTACCGGAATAACTATGGAGAGTTCGTGAACTATGGAGAGTTCAAGAACGAAATAGAGTTGCTTTGCCAGCTTCGTCATGCTAATTTGGTGTCTCTTATAGGATTCTGCAACCTCAAACATGAGAAGATTATTGTGTACGACTACATACCCAATGGAACTTTCCATGATCATCTACACGATAGGGACAGGGACACACTCTCATGGAAGAAAAGGCTTGAGATATGCATAGGAGCAGCATGTGGGGTGCACTACCTTCACACAGGAGCCAAGCGCACGATAATTCACCTTGACGGACAACGTTTCATGTCGAAGCCAAAACCAATTGAAGTAGACCGCATTTGTGGTACTTTCGGTTTCATGGCCCCTGAGTATACCATGTACGGTACCGTCACAGATAAATGTGATGTTTACTCATTTGGTAGGCTTCTACTAGAAGTTGTGTTGGAAAAGCCAATATCCTCAATACAGTCGTCCAAACCTGCTTGGGAGAATATTGATCCGAATCTCAAAGGGAATATTGCACCAGAGTGTTGGGAAGTATTTATGGATATCACGGAAAGATGCTTGAAGGAGGAAGCAGATGAGCGACCAACAATGGGTGAAGTAGAGGTGCAACTTGAGCTTGCTCTATCATTGCAGGAAGAAGCAGATAGCACAACTACCAATGGTAAATACACCTTATTGTCCAACACCATTATTAAGCTGGGACCGGAATTTGAGGACAGTGTGATATAG 969 0.4272 MLLKCLGFCHSKDTSASKGQYPTVIEELCHHFSPADLRKSTNNFDENQLIGRGGFGSVYKGCLKHNGVSDYTVALKRSYRNNYGEFVNYGEFKNEIELLCQLRHANLVSLIGFCNLKHEKIIVYDYIPNGTFHDHLHDRDRDTLSWKKRLEICIGAACGVHYLHTGAKRTIIHLDGQRFMSKPKPIEVDRICGTFGFMAPEYTMYGTVTDKCDVYSFGRLLLEVVLEKPISSIQSSKPAWENIDPNLKGNIAPECWEVFMDITERCLKEEADERPTMGEVEVQLELALSLQEEADSTTTNGKYTLLSNTIIKLGPEFEDSVI 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2596g00011 322 SUPERFAMILY Protein kinase-like (PK-like) 20 288 IPR011009 -
Gabi2596g00011 322 PANTHER OS07G0166700 PROTEIN 191 291 IPR045272 GO:0004714|GO:0006468
Gabi2596g00011 322 Gene3D Phosphorylase Kinase; domain 1 6 126 - -
Gabi2596g00011 322 FunFam Receptor-like protein kinase ANXUR2 6 126 - -
Gabi2596g00011 322 Gene3D Transferase(Phosphotransferase) domain 1 128 177 - -
Gabi2596g00011 322 ProSitePatterns Protein kinases ATP-binding region signature. 50 76 IPR017441 GO:0005524
Gabi2596g00011 322 Pfam Protein tyrosine and serine/threonine kinase 47 174 IPR001245 GO:0004672|GO:0006468
Gabi2596g00011 322 Pfam Protein tyrosine and serine/threonine kinase 196 283 IPR001245 GO:0004672|GO:0006468
Gabi2596g00011 322 Gene3D Transferase(Phosphotransferase) domain 1 178 304 - -
Gabi2596g00011 322 ProSiteProfiles Protein kinase domain profile. 44 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2596g00011 Gabi-Chr2596 80424 86561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2596g00011 3 302 Receptor kinase-like Gene Family AT3G51550 38.529 1.30e-65 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gabi2596g00011 PK_Tyr_Ser-Thr 1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2596g00011 - - gmx:100305395 352.829